Gene Pfl01_5042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_5042 
Symbol 
ID3713698 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp5679358 
End bp5679912 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content64% 
IMG OID 
Productisochorismatase hydrolase 
Protein accessionYP_350770 
Protein GI77461263 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00512316 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGCCAAGC AAGCGCTCAT CGTAGTCGAT ATCCAGAACG ACTACTTCCC CCAAGGCAAG 
TGGCCGCTGG CCGGTGCCGA CGCCGCCGCC GACAACGCCG CCCGGTTGAT CGCGGCCTTC
CGCGAGGCCG GCGATTCGGT GGTGCACATC CGCCACGAAT TCACCTCGCC CGAGGCGCCG
TTTTTCACTC CGGGCTCCGA GGGCGCCAAG CTGCATCCGA AAGTGCTCAA CCGCGCCGAC
GAGCCGGTGG TCCTCAAGCA CTTCGTCAAC TCGTTCCGCG AAACCGAGCT GCAATCGATC
CTCGACGAGC AAGGCATCAA GGAGCTGGTG GTGGTCGGCA GCATGAGCCA CATGTGCGTC
GATGGCGTTA CTCGCGCGGC GGCCGATCTG GGTTACACCG TTACGGTGAT CCACGATGCT
TGCGCCAGCC GTGACCTGGA ATTCAACGGT CTGACCGTGC CCGCCGCCCA CGTGCATGCG
GCGTTCATGT CGGCGCTGGG GTTTGCCTAT GCCAGCGTGG TATCCACCGA CGAGTTCCTC
GCTGCCAGCC GCTAA
 
Protein sequence
MAKQALIVVD IQNDYFPQGK WPLAGADAAA DNAARLIAAF REAGDSVVHI RHEFTSPEAP 
FFTPGSEGAK LHPKVLNRAD EPVVLKHFVN SFRETELQSI LDEQGIKELV VVGSMSHMCV
DGVTRAAADL GYTVTVIHDA CASRDLEFNG LTVPAAHVHA AFMSALGFAY ASVVSTDEFL
AASR