Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_4959 |
Symbol | holA |
ID | 3715878 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | + |
Start bp | 5587653 |
End bp | 5588690 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | |
Product | DNA polymerase III subunit delta |
Protein accession | YP_350687 |
Protein GI | 77461180 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.67916 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCTCG CTCCCGCCCA ACTCGGCAAA CACCTGCAAG GCGCCCTCGC GCCGGTCTAC ATCATCAGCG GCGATGACCC GCTGCTGTGT CAGGAAGCTG CCGACGCCAT TCGCTCCGCT GCCCGTCAGC AAGGGTTCGA CGAACGCCAG GTCTTTGCCG CCGACGCCAA TTTCGATTGG GGTACGCTGC TGCAGGCCGG CGCCAGCATG TCGCTGTTCG CCGAAAAGCG CTTGCTGGAA CTGCGCCTGC CTTCGGGCAA GCCCGGTGAC AAGGGCGCCG CCGCGCTGAT CGAGTACTGC TCGCGCCCGG CTGAAGACAC GGTACTGTTG ATCAGCCTGC CGAAGCTGGA CGGTAGCGCG CAGAAGACCA AGTGGGGCAA GGCGCTGGTC GAGGGTCAGC AGACCCAGTT CGTGCAGATC TGGCCGGTAG ATGCCAACCA GCTGCCGAGC TGGATTCGTC AGCGACTGTC CCAGGCCGGC TTGTCGGCCA GCCAGGACGC GGTCGAATTG ATCGCCGCGC GGGTCGAAGG CAATCTGCTG GCTGCCGCGC AAGAGATCGA AAAACTCAAG CTGATGGCCG AGGGCGGGCA GATCACCGTC GAAACCGTGC AGGCAGCCGT GGCCGACAGT GCGCGCTTCG ACGTATTCGG CCTGACCGAC GCAGTGCTCA ACGGCGAACC GGCTCACGCC CTGCGCATGC TCGAAGGGCT GCGCGGTGAA GGGGTCGAAC CACCGGTGAT CCTCTGGGCT CTGGCCCGGG AGTTGCGCTT GCTGGCCAAC ATCTCGTTGC AGTACAGCCA GGGCACACCG CTGGACAAGT GCTTCAGTCA GGCCAAGCCG CCGGTCTGGG ACAAGCGCAA ACCGCTGATG AGCAAGGCCC TGCAACGTTA CTCGGCGCAA CGCTGGGCGC AGTTGCTGCT CGAAGCCCAG CGTATCGATG CGCAGATCAA GGGCCAGGCA GCCGGTTCGC CGTGGATGAG CCTCAGCCGG TTGGCGCTGC TGATGGCCGG TCAGCGTCTG ACATTACCTG CCGAATGA
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Protein sequence | MKLAPAQLGK HLQGALAPVY IISGDDPLLC QEAADAIRSA ARQQGFDERQ VFAADANFDW GTLLQAGASM SLFAEKRLLE LRLPSGKPGD KGAAALIEYC SRPAEDTVLL ISLPKLDGSA QKTKWGKALV EGQQTQFVQI WPVDANQLPS WIRQRLSQAG LSASQDAVEL IAARVEGNLL AAAQEIEKLK LMAEGGQITV ETVQAAVADS ARFDVFGLTD AVLNGEPAHA LRMLEGLRGE GVEPPVILWA LARELRLLAN ISLQYSQGTP LDKCFSQAKP PVWDKRKPLM SKALQRYSAQ RWAQLLLEAQ RIDAQIKGQA AGSPWMSLSR LALLMAGQRL TLPAE
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