| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_4869 |
|---|
| Symbol | |
|---|
| ID | 3716228 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 5486394 |
|---|
| End bp | 5488832 |
|---|
| Gene Length | 2439 bp |
|---|
| Protein Length | 812 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | |
|---|
| Product | ATP-dependent protease, putative |
|---|
| Protein accession | YP_350597 |
|---|
| Protein GI | 77461090 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGATC CTGTTGCTGC CAGCTTGCGT CTAGCGCCCG AAGCGCTGAC CCGTCCGTTT
TCCGCTGAAC AGTTCAGCTT CACTACCACC AATGATCTGG AGCCCTTTCG CGGTGTGCTC
GGCCAGGAAC GTGCGGTCGA AGCCTTGCAG TTCGGTGTGG CCATGCCACG CCCCGGTTAC
AACGTGTTCG TCATGGGCGA GCCCGGCACC GGCCGGTTCT CGTTCGTCAA ACGCTACCTG
AAGGCTGAAG GCAAACGCCT GCAGACCCCG GCGGACTGGG TCTACGTCAA CAATTTCGAT
GAGCCGCGCG AGCCCCGTGC CCTGGAACTG CCATCGGGCA CTGCCGGTGC TTTTATCGGC
GATATCAACG GCCTGATCGA CAACCTGCTG GCGACCTTTC CTGCGGTGTT CGAACACCCG
TCCTACCAGC AGAAAAAGAG CGCCATCGAC CGCGCCTTCA ACCAGCGCTA TGACAAGGCA
CTGGATGTCA TCGAACGTCT GGCTTTGGAA AAAGACGTCG CCCTGTATCG CGACAGCAGC
AACATTGCCT TCACCCCGAT GCTCGAAGGC AAGGCGCTGG ACGAAGCTGA ATTCGCTCAA
TTGCCGGAAG CCGAGCGCGA ACGCTTTCAC GACGATATTT CCGCTCTCGA AGAACGCCTG
AACGAAGAAC TCGCCAGCCT GCCGCAATGG AAGCGTGAGT CGAGCAACCA GTTGCGTCAG
CTCAACGAAG AAACCATCAC CCTGGCGTTG CAGCCCTTGC TCGCACCGCT GTCGGAAAAG
TACGCGGAAA ACGCGGCCGT CTGCGGCTAT CTGCAAGCGA TGCAGGTCTA TCTGCTTAAA
ACCGTGGTCG AGCAACTGGT CGATGACAGC AAGACCGACG CCGTCGCGCG CAAGCTGCTG
GAAGAGCAAT ACGCCCCCAG CCTGGTGGTC GGCCATCCGG CCAGCGGCGG TGCGCCGGTG
GTGTTCGAGC CGCATCCGAC CTACGAAAAC CTGTTCGGCC GTATCGAGTA CACCACCGAT
CAAGGCGCGC TCTACACCAC CTATCGCCAG CTGCGTCCGG GTGCGTTGCA CCGTGCAAAC
GGTGGTTTCC TGATCCTTGA AGCAGAAAAA ATGCTCGGCG AGCCGTTCGT GTGGGATGCG
CTCAAGCGCG CCCTGCAATC GCGCAAGCTG AAGATGGAGT CGCCGCTGGG CGAGATGGGC
CGTTTCGCCA CCATGACGCT CAACCCGCAG CACATTCCGC TGCAGGTCAA AGTGATCATC
ATCGGTGCCC GTCAGCTGTA TTACACGCTG CAGGACCTCG ATCCGGACTT CCAGGAGATG
TTCCGCGTTC TGGTGGACTT CGACGAAGAC ATCCCGATGG TCGACGAAAG CCTGGAGCAG
TTCGCCCAGT TGCTGAAAAC CCGCACTTCG GAAGAGGGCA TGGCGCCGCT GACCGCCGAC
GCGGTGGCGC GCCTGGCGAC TTACAGTGCG CGTCTGGCCG AACACCAGGG GCGTTTGTCG
GCGCGGATCG GCGATCTGTT TCAGTTGGTC AGCGAGGCGG ATTTCATCCG GCATCTGGCC
AACGATGAGA TGACCGACGC CGGCCACATC GAGCGTGCGC TCAAGGCCAA GGCCACTCGC
ACCGGTCGGG TGTCGGCGCG GATTCTCGAC GACATGCTGG CGGGGATCAT CCTGATCGAT
ACCGATGGGG CGGCGGTCGG CAAGTGCAAC GGGCTGACGG TGCTCGAAGT CGGTGACTCG
GCGTTCGGTG TGCCGGCGCG GATTTCCGCC ACGGTGTACC CGGGCGGCAG CGGCATCGTC
GACATCGAAC GTGAGGTCAA CCTCGGCCAG CCGATCCACT CCAAGGGCGT GATGATTCTT
ACCGGGTATC TGGGCAGCCG TTACGCCCAG GAATTCCCGC TGGCGATTTC CGCGAGCATC
GCGCTGGAGC AATCCTACGG CTACGTCGAT GGCGACAGTG CGTCGCTGGG CGAGGCGTGC
ACGCTGATTT CGGCGTTGTC GAAAACCCCG CTCAAGCAAT GCTTCGCGAT CACCGGCTCG
ATCAACCAGT TCGGTGAAGT GCAGGCGGTG GGCGGGGTCA ACGAGAAGAT CGAAGGCTTC
TTCCGTCTCT GCGAAGCGCG CGGGCTGACG GGCGAGCAGG GCGCGATCAT TCCGCAGGCC
AACGTCGCCA CCTTGATGCT CGATGAGAAG GTGCTGGCAG CGGTGCGTGC CGGGCAGTTC
CACGTTTACG CGGTGCGTCA GGCCGACGAA GCGTTGAGCC TGCTGGTGGG CGAGCCGGCC
GGTGAGCCGA ACGAACAGGG CGAATTTCCG GAAGGCAGCG TCAACGCGCG GGTGGTGGAG
CGTCTGCGGG TGATTGCCGA GATGATCAGC GAAGAGGATC TGAAGGAGGC CGAGAAGGAA
CTGGCGCAGG AGGCGCTGGC GGAGGCCAAA CCGGCCTGA
|
|---|
| Protein sequence | MPDPVAASLR LAPEALTRPF SAEQFSFTTT NDLEPFRGVL GQERAVEALQ FGVAMPRPGY
NVFVMGEPGT GRFSFVKRYL KAEGKRLQTP ADWVYVNNFD EPREPRALEL PSGTAGAFIG
DINGLIDNLL ATFPAVFEHP SYQQKKSAID RAFNQRYDKA LDVIERLALE KDVALYRDSS
NIAFTPMLEG KALDEAEFAQ LPEAERERFH DDISALEERL NEELASLPQW KRESSNQLRQ
LNEETITLAL QPLLAPLSEK YAENAAVCGY LQAMQVYLLK TVVEQLVDDS KTDAVARKLL
EEQYAPSLVV GHPASGGAPV VFEPHPTYEN LFGRIEYTTD QGALYTTYRQ LRPGALHRAN
GGFLILEAEK MLGEPFVWDA LKRALQSRKL KMESPLGEMG RFATMTLNPQ HIPLQVKVII
IGARQLYYTL QDLDPDFQEM FRVLVDFDED IPMVDESLEQ FAQLLKTRTS EEGMAPLTAD
AVARLATYSA RLAEHQGRLS ARIGDLFQLV SEADFIRHLA NDEMTDAGHI ERALKAKATR
TGRVSARILD DMLAGIILID TDGAAVGKCN GLTVLEVGDS AFGVPARISA TVYPGGSGIV
DIEREVNLGQ PIHSKGVMIL TGYLGSRYAQ EFPLAISASI ALEQSYGYVD GDSASLGEAC
TLISALSKTP LKQCFAITGS INQFGEVQAV GGVNEKIEGF FRLCEARGLT GEQGAIIPQA
NVATLMLDEK VLAAVRAGQF HVYAVRQADE ALSLLVGEPA GEPNEQGEFP EGSVNARVVE
RLRVIAEMIS EEDLKEAEKE LAQEALAEAK PA
|
|---|
| |