| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_4799 |
|---|
| Symbol | |
|---|
| ID | 3716619 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 5414352 |
|---|
| End bp | 5415389 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | |
|---|
| Product | transport system permease protein |
|---|
| Protein accession | YP_350527 |
|---|
| Protein GI | 77461020 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00000697014 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00165127 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGC TGGTCAAGCC CCGTGGCTTG TTTATCGGCC TGATCTTGCT GTGTCTGCTG
GCGATCTGGC TGTCGCTGGC GTTGGGGCCG GTGAGTCTGC CGTTGTTCGA TACCTTGCGC
GCTGCCCTGC GCATGATCGG TGTGCCGCTG GCGCCGGACG GGCTGGAGCA GGCTGAACTG
ATTCTCGGGC AGATTCGTCT GCCGCGTACG CTGCTCGGGT TGGCAGTTGG CGGTGTGCTG
GCGCTGTCCG GGGTGGCGAT GCAGGGGCTG TTTCGCAATC CGCTGGCGGA TCCAGGTTTG
GTTGGCGTCT CGAGTGGAGC GGCGTTGGGC GCGGCGGTGG CGATTGTCGG TGGTTCGTTT
TTTGGCGGAC TGCCAGAGTG GTTCGGGCCT TATCTGCTGT CGGTTTGCGC GTTTCTCGGT
GGCCTTGGCG TAACTGCGCT GGTCTATCGA CTCGGCCGCC GTAACGGGCA GACCAATGTG
GCGACCATGT TGCTGGCGGG GATTGCCCTG ACGGCGCTGG CCAGTTCGGC GGTGGGGCTG
TTTACCTATC TGGCCGACGA CGCGACATTG CGCACATTGA CGTTCTGGAA CCTGGGCAGC
CTCAACGGTG CAAGTTATGC GCGATTGTGG CCGCTGCTGA TCATCACCGC CGGTGTTGCA
CTTTGGCTCC CACGCCGAGC CAAGGCGTTG AATGCATTGC TGCTCGGCGA ATCGGAAGCC
GGGCATCTGG GAATCGATGT CGAACGGCTC AAGCGTGAGC TGGTGTTCTG CACGGCGCTG
GGCGTCGGTG CGGCGGTGGC CGCGGCGGGC ATGATCGGTT TTGTCGGGCT GGTGGTGCCA
CATCTGGTGC GCTTGCTCGT GGGGCCGGAT CACCGGGTGT TGCTGCCGGC ATCGGTGCTG
GCCGGAGCCA GTCTGTTGCT GTTGGCTGAT CTGGTGGCGC GGCTGGCGCT GGCACCGGCG
GAGCTGCCGA TCGGCATCGT CACCGCGTTC ATCGGTGCGC CGTTCTTTCT TTATCTGTTG
CTGCGAGGGC GTGCCTGA
|
|---|
| Protein sequence | MTTLVKPRGL FIGLILLCLL AIWLSLALGP VSLPLFDTLR AALRMIGVPL APDGLEQAEL
ILGQIRLPRT LLGLAVGGVL ALSGVAMQGL FRNPLADPGL VGVSSGAALG AAVAIVGGSF
FGGLPEWFGP YLLSVCAFLG GLGVTALVYR LGRRNGQTNV ATMLLAGIAL TALASSAVGL
FTYLADDATL RTLTFWNLGS LNGASYARLW PLLIITAGVA LWLPRRAKAL NALLLGESEA
GHLGIDVERL KRELVFCTAL GVGAAVAAAG MIGFVGLVVP HLVRLLVGPD HRVLLPASVL
AGASLLLLAD LVARLALAPA ELPIGIVTAF IGAPFFLYLL LRGRA
|
|---|
| |