Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_4752 |
Symbol | ipk |
ID | 3715173 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | + |
Start bp | 5356029 |
End bp | 5356880 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | |
Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
Protein accession | YP_350480 |
Protein GI | 77460973 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0166409 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.13077 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCGCTC CACGCCTCAC TTTGCCTTCA CCGGCCAAAC TCAACCTGAT GTTGCACATT CTCGGTCGCC GTGAAGACGG TTATCACGAA TTGCAGACGC TTTTTCAGTT CCTCGACTAC GGCGACGAAA TCACCTTCGC CGTCCGTGAC GACGGCGTGA TTCGCCTGCA CACCGAATTC GACGGAGTGC CCCACGACAG CAACCTGATC GTGCGCGCGG CGAAAAAACT GCAGGAACAA TCCGCCTGCT CGCTCGGCAT CGACATCTGG ATCGACAAGA TCCTGCCGAT GGGCGGCGGC ATCGGGGGCG GCAGCTCGAA TGCGGCCACC ACCCTGCTTG GCCTCAATCA TTTGTGGCGA CTGGGTTGGG ATGAAGATCG CCTGGCTGCA CTGGGCCTGA CGCTGGGCGC CGACGTGCCG GTGTTCGTGC GTGGTCATGC GGCTTTTGCC GAAGGTGTCG GTGAGAAACT GACCCCGGTC GAGCCCGCCG AACCGTGGTA CGTCGTGCTC GTTCCGCAAG TCTCTGTTAG TACGGCAGAA ATTTTTTCAG ATCCTTTGTT GACACGTAAC ACGCCGCCCA TTAAAGTGCG CCCCGTTCCC GAGGGAAACA GTCGAAATGA CTGCTTGCCG GTGGTCTCGA GGCGTTATCC AGAAGTACGT AACGCATTGA ATTTGTTAGG TAATTTTACC GAAGCAAAAC TTACCGGAAC TGGAAGTTGT GTGTTTGGGG GCTTCCCAAG CAAAGCTGAA GCTGATAAAG TCTCGGCCCT TCTGACAGAG ACCCTTACAG GGTTTGTAGC GAAAGGAAGC AACGTTTCGA TGTTGCATCG CAAGCTGCAA AGTCTGCTCT AA
|
Protein sequence | MTAPRLTLPS PAKLNLMLHI LGRREDGYHE LQTLFQFLDY GDEITFAVRD DGVIRLHTEF DGVPHDSNLI VRAAKKLQEQ SACSLGIDIW IDKILPMGGG IGGGSSNAAT TLLGLNHLWR LGWDEDRLAA LGLTLGADVP VFVRGHAAFA EGVGEKLTPV EPAEPWYVVL VPQVSVSTAE IFSDPLLTRN TPPIKVRPVP EGNSRNDCLP VVSRRYPEVR NALNLLGNFT EAKLTGTGSC VFGGFPSKAE ADKVSALLTE TLTGFVAKGS NVSMLHRKLQ SLL
|
| |