Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_4051 |
Symbol | |
ID | 3713902 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | - |
Start bp | 4575106 |
End bp | 4577100 |
Gene Length | 1995 bp |
Protein Length | 664 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | |
Product | polysaccharide biosynthesis protein CapD |
Protein accession | YP_349779 |
Protein GI | 77460272 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.8742 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.411044 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATAAAA TGCGAGCATT TCTGCTGGGT TTGCCGCGTC GTCAAAAACG ACTGCTGCAG GTGGCCACCG ACGTCGTTCT CGTCTGGGGG GCGCTGTGGC TGGCATTCAT CGTTCGCCTC GGAATCGATG ATATGTACAA CCCCATCAAA GTGCATGCCT GGCTATTCGT CTGTGCCCCG CTTGTTGCAA TACCGCTGTT TATTCGATTT GGCATGTATC GCGCGGTCAT GCGCTACTTC GGCAATGATG CACTAATTGC CATCATCAAG GCGGTCAGCC TTTCTTCACT GATACTCGCA GTAGTTGTCT ACTGGTACAG CAATCATGAA AGTGTTGTCC CCAGATCCAT CATTTTCAAC TACTGGTGGC TGAGTCTGGT GATCATTGGC GGATTGCGCC TGTGCATGCG TCAGTATTTC ATGGGTGACT GGTTCACCGC AGCCCAGCAC GTACCGTTCA CCAGTCGCGA CGATGGCCTG ACCAAGGTGG CGATCTATGG TGCCGGAGTC GCCGGTAATC AGTTGGTCGC GGCTCTGCGA ATGGGGCGAG TCATGCGCCC GGTGGCGTTC ATCGATGATG ATGCGAGTAT CGCTGATCGG GCCATTTCGG GTCTGCAGGT CTATAAGCCC AAGCACATTC AGCAAATGAT CGACGTGACG GGAGCGCAGG AAATTCTCCT GGCGCTGCCT TCATCCACTC GTGCCCGTCG CCGGGAAATC CTCAATTTGC TGGAAGGATT CCCACTGCAT ATTCGCAGTG TTCCAAGTTT TACCGACCTG GCCAGCGGCC GGGTGAAGGT CGATGACATT CAGGAAGTCG ACATCGCGGA CCTGCTGGGG CGCGACTCGG TGCCGGCCCA ATCCGATCTG CTGGCTCACT GCATTACCGG CAAAGTGGTG ATGGTGACAG GCGCGGGCGG GTCGATCGGT TCGGAGCTCT GCCGGCAAAT CTTTCTGCTT GGGCCGATAA CGCTTCTGCT GTTCGATCAC AGTGAGTTCA ATCTATACAG CATTCTGTCC GAGCTCGAAC AGCGCATCGC GCGCGAGTCT GTCTCCATTC GTCTACTGCC GATTCTCGGT TCCATCCGGC ATCCTCACAA GCTCCTGGAT GTCATGAAGA CGTGGGGCGT GGACACTGTC TATCACGCGG CCGCCTATAA ACATGTGCCC ATGGTTGAAC ACAATATTGC CGAAGGTGTG CTGAATAACG TGATCGGCAC CCTCAATACG GCGCAGGCAG CACTGCAGGC AGGTGTTTCC AACTTTGTTC TGATTTCCAC CGACAAGGCT GTGCGCCCCA CCAATATCAT GGGCAGCACC AAGCGACTTG CCGAGCTGAC CCTGCAGGCG CTGAGTCGTG AGCTGGCCCC TGTACTGTTC GGCGACAAGG CCAATGTGTC TCGCGTCAAC AAGACGCGAT TCACCATGGT GCGTTTCGGA AATGTGCTGG GTTCGTCGGG GTCGGTGATT CCGCTGTTCC ATAGCCAGAT CAAATCCGGC GGTCCGCTGA CGGTCACTCA TCCCAAGATC ACCCGCTATT TCATGACGAT CCCGGAAGCC GCGCAGTTGG TGATCCAGGC CGGCTCCATG GGGCAGGGGG GAGATGTCTT TGTGCTGGAC ATGGGAGAGC CGGTCAAAAT TGTCGAGCTC GCTGAAAAGA TGATTCACCT GTCCGGCCTC AGTGTGCGTT CGGAAAAGAA TGTGCACGGC GATATTGCAA TCGAATTCAC CGGGTTGCGG CCAGGGGAGA AGCTCTATGA AGAACTCCTG ATCGGTGACA ATGTTTCGGC GACGCCTCAC CCCATGATCA TGAGTGCCAA CGAGGACCTC ATTCCCTGGG ACGTGCTCAA GGTTCGGCTG TCGGAATTGC TGGCTGCAGT CGAAAAGGAC GACTACTCCC GCGTTCGGCA GATTTTGCGC GAAACCGTCA GTGGCTATGC GCCTGATGGA GAAATTGTCG ACTGGATCTA TCAGCAGCGT CGCCTCGACC CTTGA
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Protein sequence | MDKMRAFLLG LPRRQKRLLQ VATDVVLVWG ALWLAFIVRL GIDDMYNPIK VHAWLFVCAP LVAIPLFIRF GMYRAVMRYF GNDALIAIIK AVSLSSLILA VVVYWYSNHE SVVPRSIIFN YWWLSLVIIG GLRLCMRQYF MGDWFTAAQH VPFTSRDDGL TKVAIYGAGV AGNQLVAALR MGRVMRPVAF IDDDASIADR AISGLQVYKP KHIQQMIDVT GAQEILLALP SSTRARRREI LNLLEGFPLH IRSVPSFTDL ASGRVKVDDI QEVDIADLLG RDSVPAQSDL LAHCITGKVV MVTGAGGSIG SELCRQIFLL GPITLLLFDH SEFNLYSILS ELEQRIARES VSIRLLPILG SIRHPHKLLD VMKTWGVDTV YHAAAYKHVP MVEHNIAEGV LNNVIGTLNT AQAALQAGVS NFVLISTDKA VRPTNIMGST KRLAELTLQA LSRELAPVLF GDKANVSRVN KTRFTMVRFG NVLGSSGSVI PLFHSQIKSG GPLTVTHPKI TRYFMTIPEA AQLVIQAGSM GQGGDVFVLD MGEPVKIVEL AEKMIHLSGL SVRSEKNVHG DIAIEFTGLR PGEKLYEELL IGDNVSATPH PMIMSANEDL IPWDVLKVRL SELLAAVEKD DYSRVRQILR ETVSGYAPDG EIVDWIYQQR RLDP
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