Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_3890 |
Symbol | acnA |
ID | 3712228 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | + |
Start bp | 4399576 |
End bp | 4402317 |
Gene Length | 2742 bp |
Protein Length | 913 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | |
Product | aconitate hydratase |
Protein accession | YP_349618 |
Protein GI | 77460111 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0185515 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCGTCCC TCGATAGTCT GAATTCTCTG AAAACCCTCA AAGTCGATGA CAAGACTTAC CACTATTTCA GCCTGCCGGA TGCCGCCAAG ACCTTGGGCG ATCTTGACAA GCTGCCGATG TCGCTGAAAG TCCTGCTGGA AAACCTGCTG CGCTGGGAAG ATGAAAAAAC CGTCACCGGC GCCGACCTCA AGGCGCTTGC CGCGTGGCTC AAGGAGCGCC GCTCCGACCG CGAAATCCAG TACCGCCCTG CCCGCGTGCT GATGCAGGAC TTTACCGGCG TACCGGCCGT GGTCGATCTG GCCGCGATGC GCGCCGCCAT GGCCAAGGCC GGCGGTGATC CGCAGCGAAT CAACCCGCTG TCGCCAGTGG ATCTGGTGAT CGACCACTCG GTGATGGTCG ACAAATTCGC CAGCGCCAGC GCCTTCGAAC AGAACGTCGA CATCGAAATG CAGCGCAACG GCGAACGCTA TGCTTTCCTG CGCTGGGGCC AGAGCGCCTT CGATAACTTC AGCGTGGTGC CGCCGGGCAC CGGGATCTGC CACCAAGTCA ACCTCGAATA CCTCGGCCGC ACGGTGTGGA CCAAGGACGA AGACGGCCGC ACCTATGCCT TCCCCGACAC GCTGGTCGGC ACCGACTCCC ACACCACCAT GATCAACGGC CTCGGCGTAC TTGGCTGGGG CGTCGGCGGG ATCGAAGCGG AAGCCGCCAT GCTCGGGCAA CCGGTGTCGA TGCTGATTCC GGAAGTGATC GGTTTCAAAC TCACTGGCAA GCTCAAGGAA GGCATCACCG CCACCGATCT GGTGCTGACC GTGACCCAGA TGCTGCGCAA GAAAGGCGTG GTCGGCAAAT TCGTCGAGTT CTATGGCGAC GGCCTCGCCG ACCTGCCGCT GGCCGACCGC GCGACCATCG CCAACATGGC CCCGGAATAT GGCGCGACCT GCGGTTTCTT CCCGGTGGAT GACGTGACCC TCGACTACTT GCGCCTGTCC GGCCGCCCGC CTGAAGTGGT GAAACTGGTC GAGGCGTACA CCAAGGCTCA GGGCCTGTGG CGCCTGCCCG GTCAGGAACC GGTGTTCACC GACAGCCTGG CGCTGGACAT GGGCAGCGTC GAAGCCAGCC TCGCCGGGCC TAAACGTCCG CAGGACCGTG TCTCGCTGCC GAATGTCGGC CAGGCGTTCA GTGACTTCCT CGACTTGCAG TTCAAACCTA CCAGCAAAGA AGAAGGACGT CTGGAAAGCG AAGGCGGTGG TGGCGTGGCG GTGGGCAATG CCGATCTGGT CGGCGAAACG GACTACGAGT ACGACGGCCA CACCTATCGC CTGAAAAACG GCGCGGTGGT GATTGCCGCG ATCACCTCCT GCACCAACAC CTCCAACCCG AGTGTGATGA TGGCGGCTGG GCTGCTGGCG AAAAAAGCCG TGGAAAAAGG CCTGACCCGC AAGCCGTGGG TGAAGAGTTC GCTGGCTCCG GGTTCGAAAG TCGTCACCGA TTACTACAAG GCCGCCGGAT TGACGCAGTA CCTCGATCAG CTCGGTTTTT CGCTGGTCGG CTATGGCTGC ACCACTTGTA TCGGCAACTC CGGGCCGCTG CCGGAACCGA TCGAAAAAGC CATCCAGAAA GCCGACCTGA CCGTGGCTTC GGTACTGTCC GGCAACCGCA ACTTCGAAGG CCGGGTGCAT CCGCTGGTGA AAACCAACTG GCTGGCCTCG CCACCGCTGG TCGTCGCTTA CGCCCTGGCC GGCAGTGTGC GCACCGACAT CAGCAGCGAG CCGCTGGGTA ACGACCAGCA GGGCAATCCG GTTTACCTGC GAGACATCTG GCCGAGCAGC AAGGAAATCG CCGACGCGGT AAATCAGGTC AATACGGCGA TGTTCCACAA GGAATACGCC GAAGTGTTTG CCGGCGACGA ACAGTGGCAA GCCATCGAAG TCCCGCAAGC GGCGACCTAT GTCTGGCAAG CGGATTCGAC CTACATCCAG CATCCGCCGT TCTTCGATGA CATTGCCGGG CCTTTGCCGG TGATCGCCGA TGTGAAAGGT GCTCGAGTGC TGGCTTTGCT GGGCGATTCG GTGACCACCG ACCACATCTC CCCCGCCGGC AACATCAAGG CCGACAGCCC GGCCGGACGT TACTTGCGCG AGCAAGGCGT CGAGCCACGG GACTTCAACT CCTACGGCTC ACGCCGGGGC AACCACGAAG TGATGATGCG CGGCACGTTT GCCAACATCC GTATCCGCAA CGAAATGCTC GGCGGCGAAG AAGGTGGCAA CACGATCTAC ATTCCGACCG GCGAGAAACT GGCGATCTAC GACGCGGCCA TGCGTTATCA AGCCTCAGGC ACGCCGCTGG TGGTGATTGC CGGGCAAGAA TACGGCACCG GTTCCAGCCG TGACTGGGCT GCCAAGGGCA CCAACCTGCT GGGCGTTAAA GCGGTGATCG CCGAAAGCTT CGAGCGCATC CACCGTTCCA ACCTGGTGGG CATGGGCGTG CTGCCGTTGC AGTTCAAGCT CGATCAGAAC CGCAAGAGCC TGAACCTCAC CGGCAAGGAA ACCCTGGATA TTCAGGGCCT GAGCGGTGTC GAGCTGACGC CACGGATGAA CCTGACCCTG GTCATCACCC GTGAAAACGG GCGTCAGGAG AAAATCGAAG TGCTGTGCCG CATCGACACC TTGAACGAGG TGGAGTACTT CAAGTCCGGC GGGATTCTGC ATTACGTGTT GCGCCAGTTG ATTGCTTCGT AA
|
Protein sequence | MPSLDSLNSL KTLKVDDKTY HYFSLPDAAK TLGDLDKLPM SLKVLLENLL RWEDEKTVTG ADLKALAAWL KERRSDREIQ YRPARVLMQD FTGVPAVVDL AAMRAAMAKA GGDPQRINPL SPVDLVIDHS VMVDKFASAS AFEQNVDIEM QRNGERYAFL RWGQSAFDNF SVVPPGTGIC HQVNLEYLGR TVWTKDEDGR TYAFPDTLVG TDSHTTMING LGVLGWGVGG IEAEAAMLGQ PVSMLIPEVI GFKLTGKLKE GITATDLVLT VTQMLRKKGV VGKFVEFYGD GLADLPLADR ATIANMAPEY GATCGFFPVD DVTLDYLRLS GRPPEVVKLV EAYTKAQGLW RLPGQEPVFT DSLALDMGSV EASLAGPKRP QDRVSLPNVG QAFSDFLDLQ FKPTSKEEGR LESEGGGGVA VGNADLVGET DYEYDGHTYR LKNGAVVIAA ITSCTNTSNP SVMMAAGLLA KKAVEKGLTR KPWVKSSLAP GSKVVTDYYK AAGLTQYLDQ LGFSLVGYGC TTCIGNSGPL PEPIEKAIQK ADLTVASVLS GNRNFEGRVH PLVKTNWLAS PPLVVAYALA GSVRTDISSE PLGNDQQGNP VYLRDIWPSS KEIADAVNQV NTAMFHKEYA EVFAGDEQWQ AIEVPQAATY VWQADSTYIQ HPPFFDDIAG PLPVIADVKG ARVLALLGDS VTTDHISPAG NIKADSPAGR YLREQGVEPR DFNSYGSRRG NHEVMMRGTF ANIRIRNEML GGEEGGNTIY IPTGEKLAIY DAAMRYQASG TPLVVIAGQE YGTGSSRDWA AKGTNLLGVK AVIAESFERI HRSNLVGMGV LPLQFKLDQN RKSLNLTGKE TLDIQGLSGV ELTPRMNLTL VITRENGRQE KIEVLCRIDT LNEVEYFKSG GILHYVLRQL IAS
|
| |