| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_3866 |
|---|
| Symbol | |
|---|
| ID | 3712296 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 4368861 |
|---|
| End bp | 4372310 |
|---|
| Gene Length | 3450 bp |
|---|
| Protein Length | 1149 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_349594 |
|---|
| Protein GI | 77460087 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCTGTTC TGCGTCTACC GCTTCTCCCT GCCGCGGCAG GTAAACAGCA CTGGGGCAAC
CTCCCCGGTG CCGCCCTGAG CCTGGCGATT GCCGAGGCTG CCAGCGCTGC CAAGCGCTTC
ACTCTGCTTT TGACCGCCGA CAGCCAGAGC GCCGAACGGC TGGAGCAGGA GCTGAGCTTC
TTCGCCCCGG ATTTGCCGGT GCTGCATTTC CCCGATTGGG AAACCCTGCC CTACGATCTG
TTTTCGCCGC ACCAGGACAT CATCTCCCAG CGCATCGCCA GCCTTTATAG GCTGCCGGAG
CTGGAGCACG GCGTGCTGGT GGTGCCGATC ACCACCGCCC TGCATCGTCT GGCGCCGACC
AAATTCCTGC TCGGCAGCAG CCTGGTGCTG GATGTCGGTC AGAAGCTCGA CGTCGAGCAA
ATGCGCTCGC GGCTCGAAGC CAGTGGCTAT CGCTACGTCG ACACGGTCTA CGAGCACGGC
GAGTTCACCG TACGTGGCGC ACTGATCGAC CTGTTCCCGA TGGGCAGCAA ACTGCCCTAT
CGCATCGACC TGTTCGACGA CGAAATCGAA ACCCTGCGTA CCTTTGATCC GGAAAACCAG
CGCTCCATCG ACAAGGTCGA TTCAGTCAAG CTTCTGCCGG CCAAGGAATT CCCGCTGCAG
AAAGACGCGG TCACCCGCTT CAAGGCGCGT TTTCGCGAGC GTTTCGACGT CGACTTCCGT
CGCTGCCCGA TCTTTCAGGA CCTGAGCAGC GGCATCACAC CGGCCGGTAT CGAGTACTAC
CTGCCGCTGT TCTTCGAGGA AACCTCGACG CTGTTTGATT ACCTGCCACA GGACACCCAG
GTGTTTTCGC TGCCGGGTAT CGAGCAGGCG GCGGAAAACT TCTGGAACGA CGTACGCAAT
CGTTATGAAG AGCGCCGCGT CGACCCTTCG CGTCCTTTAT TGCCGCCGGC CGAACTGTTC
CTGCCGGTGG AGGACTGCTT TGCCCGCCTG AAGAACTGGC CGCGTGTGGT CGCCAGTCAG
CAGGATGTTG AGTCCGGTGC AGGCCGCGAG CGTTTCCCGG CGCAGGCACT GCCGAATCTG
GCGATCGAAG CCAAGGCTAC CCAGCCGCTG GCCGCGCTCT CGGCATTCCT CGACGAATTT
CCCGGACGCG TGCTGTTCAC CGCCGAATCC GCCGGTCGTC GCGAGGTGCT GCTGGAGTTG
CTGGATCGCC TGAAGCTACG GCCGAAAACC GTCGACAGCT GGCCGGACTT TGTCGCAAGC
AAGGATCGCC TGGCGATCAC CATCGCCCCG CTCGACGAAG GCCTGATGCT CGACGACCCG
GCGCTGGCAC TGGTCGCGGA AAGTCCGCTG TTCGGCCAGC GCGTGATGCA GCGTCGCCGT
CGCGAAAAAC GCGCCGACGC CAACAACGAT GCGGTGATCA AGAACCTCAC CGAACTGCGT
GAAGGCGCGC CGGTGGTGCA CATCGATCAC GGCGTCGGCC GTTATCTCGG CCTGACGATT
CTGGAAATCG ACAATCAGGC TGCCGAATTC CTGACCCTTG AATACGCCGA GAACGCCAAG
CTCTACGTGC CGGTGGCCAA CCTGCACCTG ATCGCCCGCT ACACCGGCAG CGACGATGCG
CTGGCCCCGC TGCACCGCCT CGGCTCCGAA ACCTGGCAGA AAGCCAAGCG CAAGGCCGCC
GAGCAAGTGC GCGACGTGGC TGCCGAATTG CTCGACATCT ACGCCCGCCG CGCCGCACGC
GAAGGTTATG CGTTTGCCGA TCCAAAGGCC GATTACGCGA CCTTCAGCGC CGGCTTCCCG
TTCGAAGAAA CCCCAGACCA GCAATCCACC ATCGAAGCCG TGCGCGAGGA CATGCTTTCG
CCGAAACCGA TGGATCGCCT GGTCTGCGGC GACGTCGGTT TCGGCAAGAC CGAAGTGGCC
ATGCGCGCCG CGTTCATCGC CGTGCACGGC GGCAAGCAAG TGGCGATCCT GGTGCCGACC
ACCCTGCTCG CCCAGCAGCA CTACAACAGT TTCCGCGACC GCTTCGCCGA CTGGCCGGTG
ACCGTGGAAG TGATGAGCCG CTTCAAGTCG GCGAAGGAAG TGAACGCAGC GGTCGCCCAA
CTGGCCGAAG GCAATATCGA CATCGTCATC GGCACTCACA AGTTGCTGCA GGACGACGTC
AAGATCAAAA ACCTTGGGCT GGTGATCATC GACGAAGAGC ACCGCTTCGG TGTCCGTCAG
AAGGAACAGC TCAAGGCCCT GCGCAGCGAA GTCGACATTC TTACGCTGAC CGCCACGCCG
ATTCCGCGCA CGCTGAACAT GGCGGTGTCG GGCATGCGCG ACCTGTCAAT CATCGCCACG
CCGCCGGCGC GACGCCTCTC CGTGCGCACC TTCGTCATGG AGCAGAACAA GAGCACGGTC
AAAGAGGCTT TGCTGCGTGA GCTGCTGCGT GGCGGTCAGG TTTACTACCT GCACAACGAC
GTGAAGACCA TCGAGAAGTG CGCCGCCGAA CTGGCCGAAC TGGTGCCGGA AGCGCGGATC
GGCATCGGCC ACGGGCAGAT GCGCGAACGC GAACTCGAAC AGGTGATGAG CGATTTCTAT
CACAAACGCT TCAACGTGCT GATCGCCTCG ACCATCATCG AGACCGGCAT CGATGTGCCG
AGCGCCAACA CCATCATCAT CGAGCGCGCC GACAAGTTCG GTCTGGCGCA GTTGCACCAG
CTGCGTGGCC GCGTTGGTCG TAGCCACCAC CAGGCTTACG CCTACCTGCT GACCCCGCCG
CGCCAGCAGA TCACCGGCGA TGCGGAAAAA CGCCTGGAGG CGATTGCGAA TACTCAAGAC
CTTGGCGCTG GTTTCGTGCT GGCCACCAAC GATCTGGAAA TCCGTGGCGC CGGCGAATTG
CTGGGCGACG GTCAGAGCGG GCAGATTCAG GCCGTTGGAT TCACGCTGTA CATGGAAATG
CTCGAGCGCG CGGTGAAGTC GATCCGCAAG GGCGAACAGC CAAACCTCGA TCAACCGCTC
GGCGGTGGTC CGGAAGTCAA CCTGCGGGTC CCGGCGCTGA TTCCGGAAGA TTACCTGCCG
GATGTGCACG CTCGCCTGAT CCTTTACAAG CGCATCGCTT CGGCCACCGA CGAGGAAGGC
CTGAAAGATC TGCAAGTCGA GATGATCGAC CGCTTTGGCC TGTTGCCGGA ACCGACCAAG
AATCTGGTGC GTATCACGGC GCTGAAATTG CAGGCAGAGC AGCTGGGCAT CAAGAAAGTC
GATGGTGGCC CGCAAGGTGG GCGCATCGAG TTCGCGGCAC AGACGCCGGT CGACCCGATG
ACCCTGATCA AACTGATCCA GAGCCAGCCA AAACGCTACA AATTCGAAGG CGCCACGATG
TTCAAGTTCC AGGTGCCGAT GGAGCGCCCG GAAGAGCGCT TTAATACTGT GGAGGCGCTG
TTCGAGCGCC TCATCCCGAA AACTGCTTGA
|
|---|
| Protein sequence | MPVLRLPLLP AAAGKQHWGN LPGAALSLAI AEAASAAKRF TLLLTADSQS AERLEQELSF
FAPDLPVLHF PDWETLPYDL FSPHQDIISQ RIASLYRLPE LEHGVLVVPI TTALHRLAPT
KFLLGSSLVL DVGQKLDVEQ MRSRLEASGY RYVDTVYEHG EFTVRGALID LFPMGSKLPY
RIDLFDDEIE TLRTFDPENQ RSIDKVDSVK LLPAKEFPLQ KDAVTRFKAR FRERFDVDFR
RCPIFQDLSS GITPAGIEYY LPLFFEETST LFDYLPQDTQ VFSLPGIEQA AENFWNDVRN
RYEERRVDPS RPLLPPAELF LPVEDCFARL KNWPRVVASQ QDVESGAGRE RFPAQALPNL
AIEAKATQPL AALSAFLDEF PGRVLFTAES AGRREVLLEL LDRLKLRPKT VDSWPDFVAS
KDRLAITIAP LDEGLMLDDP ALALVAESPL FGQRVMQRRR REKRADANND AVIKNLTELR
EGAPVVHIDH GVGRYLGLTI LEIDNQAAEF LTLEYAENAK LYVPVANLHL IARYTGSDDA
LAPLHRLGSE TWQKAKRKAA EQVRDVAAEL LDIYARRAAR EGYAFADPKA DYATFSAGFP
FEETPDQQST IEAVREDMLS PKPMDRLVCG DVGFGKTEVA MRAAFIAVHG GKQVAILVPT
TLLAQQHYNS FRDRFADWPV TVEVMSRFKS AKEVNAAVAQ LAEGNIDIVI GTHKLLQDDV
KIKNLGLVII DEEHRFGVRQ KEQLKALRSE VDILTLTATP IPRTLNMAVS GMRDLSIIAT
PPARRLSVRT FVMEQNKSTV KEALLRELLR GGQVYYLHND VKTIEKCAAE LAELVPEARI
GIGHGQMRER ELEQVMSDFY HKRFNVLIAS TIIETGIDVP SANTIIIERA DKFGLAQLHQ
LRGRVGRSHH QAYAYLLTPP RQQITGDAEK RLEAIANTQD LGAGFVLATN DLEIRGAGEL
LGDGQSGQIQ AVGFTLYMEM LERAVKSIRK GEQPNLDQPL GGGPEVNLRV PALIPEDYLP
DVHARLILYK RIASATDEEG LKDLQVEMID RFGLLPEPTK NLVRITALKL QAEQLGIKKV
DGGPQGGRIE FAAQTPVDPM TLIKLIQSQP KRYKFEGATM FKFQVPMERP EERFNTVEAL
FERLIPKTA
|
|---|
| |