| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_3044 |
|---|
| Symbol | |
|---|
| ID | 3712728 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 3484548 |
|---|
| End bp | 3487034 |
|---|
| Gene Length | 2487 bp |
|---|
| Protein Length | 828 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | |
|---|
| Product | fimbrial biogenesis outer membrane usher protein |
|---|
| Protein accession | YP_348773 |
|---|
| Protein GI | 77459266 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.120847 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.603969 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTTTT TAAAGCGCGA TGGATTGGCG CCGTTATCGG TTGCACTGGT CGTCAGCACA
ACTTGCCTGG CCGATGGCGA AGAACAATTC AATACATCGT TTCTGCAAGG CGCGACGTCT
GCCGTCGATC TGCAGACCCT GCTCGCCGGA AGCCAGGTTC TCCCCGGCAC TTATCGGGTC
GACCTGTATG GCAATGACAC CTTGGTCGGC CGTCGCGATA TCGATTTTCG CCGCCAGCCC
GACAGCCACA AGGTCGAAGC CTGCCTGACG CTGGACATGC TCAAGCAACT GGGTGTGGAT
CTTGGCAAGC TGCAGGCCAG CGGCAAGCTC GACGACGCCG CCGACACCTG CCTTGATCTG
CCCGCGCTGA TCGATCAGGC CACCGTGCGC TATGACGTGC CGCGCCTGCG GTTGCTGGTC
AGCGTGCCGC AAAGCGCCAT GGAGCGTGGC CGCCGTGGTT ATGTCGATCC AGCGCTGTGG
GACGAAGGCG TACCCGCAGC GTTCATCAAC TATCAGGTGA GCAGCAACCG CAACAGCACC
GACGCTGATA CCACGTTTGC CAATAACGTC GGCCTGCGCA ACGGCATTAA CCTCGGCAGC
TGGCGCTTGC GCAACGAGTC CAATTTCAAC AGCAGCACTG GACGGCCAAG CACGTTCAAG
AGCAATCGCA GCTATCTGCA GCACGACGTC ACAGCGCTGA AGGGCCAGTT CAGTGCCGGC
GATATCTTCT CCGACGCCGA CCTGTTCGAC AGCGTGCGCT ATCGCGGCCT GAAACTGGCC
TCCGACGATG GCATGCGTGC CGATAGCGAG CGCGGCTATG CGCCGGTGAT TCGCGGTATC
GCGCAATCAA GCGCTACCGT GGAGATTCGC CAGAACAATT ACATTCTGTA CACCGCCAAC
GTGCCGCCGG GGCCGTTCGA AATCAGCGAC ATCTATCCCA GCGGCTCCAA CGGCGATCTG
GAAATCACTG TAATCGAAGC CGACGGTCGG CGCCGGGTGA CGGTGCAGGC GTTTTCCAGC
CTGCCGATCA TGGTTCGCGA AGGGCAACTC AAGTACAGCA TCTCGGCGGG CCGCTACAAC
AGCAATAGCG ATGATCAGCA ATCGCCGGAG TTCGTCAGCA GCACGGTGGC CTACGGGGTC
AGCAGCAACT TGTCGGCGAT CGTGGGCACC CAGGCCAGCG AAGATTTCCA GGCGTTTTCC
GTTGGCGCCG GGCGCAACAC CGCGATCGGT GCGATCTCGC TGGACCTGAC CCACTCCAGC
AGCCGCACCT TTGGCCAGAC CGTCAAGGGC AACAGCCTGC GCGCGTTGTA TGCCAAGACG
TTCACCGGCA CCGACACCAA CTTCACCCTC GCCGCTTACC GCTATTCGAC CGAGGGCTAT
CGAACCTTCA GCGAACATGT CGAGGAACTG AGCAGCGAGG GCCAGAAGCG CACCGGTAAT
TCGAAAACCC GCACCGACCT GACCGTCAAC CAGAGCCTGG GGCGCAACCA GCAGTTCGGT
AGCATCTACC TTAACGCCAG CGACCAGCGT TATTGGGGGC GCGGCGGTTC GCAGAGCCTG
TCTGCCGGCT ACAGCAATTA TTGGGGCGAG GTCAGCTACA ACCTTAGCGC GACTTACACC
AAGGATGTCG GCAACTATGG GCCGGCCAAC AACGACACTT TGTTCAACCT CTCTGTGTCG
TTTCCGCTGG GCTCGAAACC CCGGGCGCCG AGGGCATTCG TTTCGGCCAG TTCGCAGAAG
GGCAACAGCA GCACGCAGGT CGGTATCAAT GGCTATCTGT CCGAAGACAG CGACACCTAT
TACTCGGTAC AGGGCAGCAA CAGTCGCACT GGCGGCAGTA CGGGTTCGGC CAACCTCAGC
ACGCGAACCT CAATGATGGA CATCAGTGCC GGTTACAGCC AGGGCCGTGG CTACAACTCG
CAGAATCTCA ACGTCGCCGG TTCGATTGTC GGGCACGCGG GCGGCATCAA CCTCGGGCAG
ACCGTCGGTG AGACGTTCGC GCTGGCACAG GTCGAGGGCG TTGAAGGCGT GAAGATCGCC
AGCTTCTCCG GGGCGAAAAC CGCTGGCAAC GGTTATGCGG TGGTGTCCAA CGCGCAGCCG
TATCGGGTCA ACTGGATCAG TCTTGACACC CGAGATCTGG GCGGTGATTT CGAAATTGAA
AACGCCACCC AGCAAGTGGT ACCGCGCCGT GGTGCCGTGG TGCTGGCGCG CTATGCCAGC
AAGACCGGGC GTCGGGTGCA ATTCGCCCTG TTCGATGCGC AGCACCAGCC AATCCCGTTT
GGGGCGACAC TGGAAGACGC CGCCGGCAAG CAACTGGCGA TCTCCGACCC AAGTGGCAAG
GCACTGGCGC TGGTCGCGGA TGACGCCGGC ACCCTGACCA TCAACTGGCA AGGCCAGCGC
TGCGAGGCAT CGTATGCTCT GCCCGAGCGG GACAAGGCGC TGAATTACGA GCGCGCATCC
TTGGTATGTC GCCCGCATCA AAACTAG
|
|---|
| Protein sequence | MFFLKRDGLA PLSVALVVST TCLADGEEQF NTSFLQGATS AVDLQTLLAG SQVLPGTYRV
DLYGNDTLVG RRDIDFRRQP DSHKVEACLT LDMLKQLGVD LGKLQASGKL DDAADTCLDL
PALIDQATVR YDVPRLRLLV SVPQSAMERG RRGYVDPALW DEGVPAAFIN YQVSSNRNST
DADTTFANNV GLRNGINLGS WRLRNESNFN SSTGRPSTFK SNRSYLQHDV TALKGQFSAG
DIFSDADLFD SVRYRGLKLA SDDGMRADSE RGYAPVIRGI AQSSATVEIR QNNYILYTAN
VPPGPFEISD IYPSGSNGDL EITVIEADGR RRVTVQAFSS LPIMVREGQL KYSISAGRYN
SNSDDQQSPE FVSSTVAYGV SSNLSAIVGT QASEDFQAFS VGAGRNTAIG AISLDLTHSS
SRTFGQTVKG NSLRALYAKT FTGTDTNFTL AAYRYSTEGY RTFSEHVEEL SSEGQKRTGN
SKTRTDLTVN QSLGRNQQFG SIYLNASDQR YWGRGGSQSL SAGYSNYWGE VSYNLSATYT
KDVGNYGPAN NDTLFNLSVS FPLGSKPRAP RAFVSASSQK GNSSTQVGIN GYLSEDSDTY
YSVQGSNSRT GGSTGSANLS TRTSMMDISA GYSQGRGYNS QNLNVAGSIV GHAGGINLGQ
TVGETFALAQ VEGVEGVKIA SFSGAKTAGN GYAVVSNAQP YRVNWISLDT RDLGGDFEIE
NATQQVVPRR GAVVLARYAS KTGRRVQFAL FDAQHQPIPF GATLEDAAGK QLAISDPSGK
ALALVADDAG TLTINWQGQR CEASYALPER DKALNYERAS LVCRPHQN
|
|---|
| |