Gene Pfl01_2815 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_2815 
Symbol 
ID3712212 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp3243985 
End bp3246297 
Gene Length2313 bp 
Protein Length770 aa 
Translation table11 
GC content60% 
IMG OID 
Productlipopolysaccharide biosynthesis 
Protein accessionYP_348546 
Protein GI77459040 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.631673 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACAACA GCCCCAGCAA CTACGTCGAA CGTCCTCTTC AAGCGCATCT GCATCCGCAG 
CACGGCGACG ACAAGGACAC CCTGGATCTG CTCAATCTGT GGAGGATTAT CTGGCGCGCC
AAGTGGCGCA TCGGCTGGCT GGTTCTGCTG AGTTGCGTAT TGGCGGCCGT GGTGGTCTCC
AATATCACGC CGCAATACAT TGGCAGCACC ACCCTGCTGT TCAACGACAA AACACCTCCG
CTGATGTCGT TCCAGCAAGT CAAGGACTCA GGCGGCAACG CCACAGATTA CTTGCAGACT
CAGCAGGCGC TCCTGCAATC GCGGGACCTT GCCGAACGCG CGGTGAAAAA ACTCGGCCTG
ACGACCCACC CGGTCACCGA TCCACGCCAG CAGCCCCAAC CCTGGTTTGC TCCGCGCCAA
TGGCTGGCCA ACCTGGACCT TGATCAATGG ATCCCGGGAC TCGGTCGATA TTTGCCGCAA
AAGAAAGAGC AGCTCACGGA AGCGGACGTC TTCAATCAGG TCACGCAGAA CCTCATGCTG
CACACCAGCG TCAAGTTCGT TGGCAAAAGC CAGTTGCTCG AAATCGAAGT CGAACTGCCA
GACCCTGTTC TGGCAGCGGC GGCGGCCAAC GCGCTGGCTC AGGGCTTCAC CGACAGCCAG
CTCGATACCA GCGAGAAATC GTCGCAAACC ACCACAGCCT GGATGAACAC GCGTCTGATC
AAGCTGCGCG ACAACCTGCG TGCGGCCGAG AAAAAGCTTC AGGGTTACCG CGAAGAACAA
GGTCTGGTGG ATGTTGGCGG TGTTGCCACC ATCAGCGCCA ACGAACTGGA AATGACCGGT
AATCGCATGG TCGACGCCCG GCGCAACCGT GCTGAAGCCG AGAGCGAGTA CCGCCAGGCC
AAGGCCCTGG GCAACGGCGA TCTGAGCCGG CTCTCCAGCG TGCCTGCGGT CTTGAGCAAT
CCCCTGGTGC AGAAATTCCA GGCCGATCGC GCTGTGGCTC AGGCCAAGGT TGATGAACTG
GCGGGCCGCT ATGGTCCAAA GCACCCCAGC CTGATTTCCG CACAAACCGA GTTGCGCACC
GCCACCACCA GCCTGCAATT GCAGGTGCAG CAAGTGGTGG CCGGTATCGA GCGGCAATAC
CAGCTCGCCA CGGCGAGCGA AGCGTCGCTG CGTCAATCCT TCAACAGCAA CAAGGCGCAA
ATCCAGGACA TCGCGCGCAA AGAGTTCCAG TTGCGCGAGT TCCAGCGTGA AGTCGACAGC
ACGCGCGCAC TGTATGAAAC CTTCGTCACC CGCCTGAAAG AAACCACGGC CACCGCCGAC
ATGGACTCGA CGAAAGTGCG CATCGTCGAC CCGGCCATTG TGCCTGTCGA CGCCAGCAAG
CCCCGCAAGA CATTGATTGT CGGGATCGTC GGGCTGATCG CTGCGGTCAT CGGCGTCGGG
CTGGCACTGC TCTTCGAGAG TCTGAGCAAT ACCTTCAAAA CCGATGAGAC GGTCGAGAGC
GTGTTGAATG TTCCACTGCT CAGCGTCGTG CCGTTGGTGG TGAAAAAAAG TCGCCGGCAA
CTGGCGCGCC TTTTCGAAGA CAACGACAAC CCGCGTTTTT CCGAGACCAT TCGCAACCTG
CGTACCTGGC TGATGCTGCA AAGCAGCGAA AAGCCCTCAC AGGTGGTGCT CGTGACCTCC
ACGGTTGCCG GCGAGGGTAA AAGCACCATC GCCACCAATC TGGCCAGTTC ACTGACGCCG
CTGGAGCGCG TGCTGCTGAT CGATGCCGAC ATGCGTCAGC CAACCCTGTC GCTGAACTTC
GATTTCCCAC CGGACAGCCC GGGACTGGCG AATGTCATTG CCGGCACGGC CAGGCTTGAA
GACTGCATTG TTTCAGTGGG CAATCTGGAC ATGCTGCCGG CCGGGAAGGT CTTGCCGCCG
TCACTGGATA TGTTCGTTGC ACCGCGCCTG CCATCCCCTG GCGATCCGCT CAACCCGGTC
CAGCCACCGC CACAGGACTT GCTCAGCTCG CCCCGCATGG CGCGCATGCT CGAGGCGCTC
AGATCACGCT ATCGCCACAT CATTATCGAC TCTCCCCCTG CGGAGATGAT CAGTGACGCG
CTGTTGCTGG CCAGACATTC CGATGCGGTG ATCTATGTCG TCAAGGCTGA CAGCACCTCG
ATCAGCCAGG TTCAGCGAGG GATTGCCATG TTGCAACAAA GCCATGTGCC GGTCTTTGGC
ACGGTGCTCA ACCAGGTCGA CCTGCGCAAG GCGCGCAAGT ACGGCTACCA CCATTCCCGG
GCGTTCTATA ACTACGATTT CGCGCCCAGG TAA
 
Protein sequence
MDNSPSNYVE RPLQAHLHPQ HGDDKDTLDL LNLWRIIWRA KWRIGWLVLL SCVLAAVVVS 
NITPQYIGST TLLFNDKTPP LMSFQQVKDS GGNATDYLQT QQALLQSRDL AERAVKKLGL
TTHPVTDPRQ QPQPWFAPRQ WLANLDLDQW IPGLGRYLPQ KKEQLTEADV FNQVTQNLML
HTSVKFVGKS QLLEIEVELP DPVLAAAAAN ALAQGFTDSQ LDTSEKSSQT TTAWMNTRLI
KLRDNLRAAE KKLQGYREEQ GLVDVGGVAT ISANELEMTG NRMVDARRNR AEAESEYRQA
KALGNGDLSR LSSVPAVLSN PLVQKFQADR AVAQAKVDEL AGRYGPKHPS LISAQTELRT
ATTSLQLQVQ QVVAGIERQY QLATASEASL RQSFNSNKAQ IQDIARKEFQ LREFQREVDS
TRALYETFVT RLKETTATAD MDSTKVRIVD PAIVPVDASK PRKTLIVGIV GLIAAVIGVG
LALLFESLSN TFKTDETVES VLNVPLLSVV PLVVKKSRRQ LARLFEDNDN PRFSETIRNL
RTWLMLQSSE KPSQVVLVTS TVAGEGKSTI ATNLASSLTP LERVLLIDAD MRQPTLSLNF
DFPPDSPGLA NVIAGTARLE DCIVSVGNLD MLPAGKVLPP SLDMFVAPRL PSPGDPLNPV
QPPPQDLLSS PRMARMLEAL RSRYRHIIID SPPAEMISDA LLLARHSDAV IYVVKADSTS
ISQVQRGIAM LQQSHVPVFG TVLNQVDLRK ARKYGYHHSR AFYNYDFAPR