| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_1500 |
|---|
| Symbol | |
|---|
| ID | 3717100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 1678399 |
|---|
| End bp | 1679961 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator TyrR |
|---|
| Protein accession | YP_347232 |
|---|
| Protein GI | 77457727 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATCA AAGTCCACTG CCAGAACCGC ATCGGCATCC TGCGCGACAT TCTCAATCTG
CTGGTGGAGT ACGGGATCAA CGTCGCCCGT GGCGAGGTGG GCGGTGAGCA TGGCAACGCG
ATCTACCTGC ATTGCCCGAA CCTGATCAAC ATTCAGTTCC AGGCGTTGCG ACCCAAGTTC
GAGGCGATTG CCGGGGTGTT CGGCGTCAAG CGGGTAGGGT TGATGCCCAG CGAGCGGCGG
CACATGGAGT TGAATGCGCT GCTCGGCGCG CTGGAGTTTC CGGTGCTGTC GATCGACATG
GGCGGCTCCA TCGTTGCCGC CAACCGTGCG GCAGCGCAGT TGCTCGGAGT ACGGGTGGAC
GAGGTGCCGG GGATTCCGTT GTCGCGTTAC GCCGAAGATT TCGATCTGCC GGAACTGGTG
CGCGCCAACA AATCGCGAAT CAACGGCATG CGGGTCAAGG TCAAGGGCGA CATCTTTCTG
GCCGACATCG CGCCGCTGCA ATCGGAACAC GACGACAGCG AGGCCATGGC TGGCGCAGTG
CTGACGCTGC ACCGCGCAGA CCGGGTCGGC GAGCGCATCT ATAACGTGCG CAAACAAGAG
CTGCGTGGCT TCGATAGCAT CTTCCAGAGC TCCAAGGTGA TGGCAGCGGT GGTGCGCGAG
GCCCGGCGCA TGGCGCCGCT GGATGCGCCG TTGTTGATTG AGGGCGAAAC CGGCACCGGC
AAGGAATTGC TGGCGCGGGC CTGCCACCTG GCGAGCCCGC GTGGTCAGTC GCCGCTGATG
GCGCTCAACT GCGCGGGGCT GCCGGAGTCG ATGGCCGAGA CCGAACTGTT CGGCTACGGC
CCCGGTGCCT TTGAGGGCGC GCGGGCCGAA GGCAAGCTCG GGCTGCTGGA GCTGACGGCG
GGCGGCACGC TGTTCCTCGA TGGTGTCGGC GAAATGAGCC CGCGCTTGCA GGTGAAACTG
CTGCGATTCC TGCAGGACGG CTGCTTCCGC CGTGTGGGCA GTGATGAAGA GGTTTACCTC
GATGTGCGGG TGATCTGCGC AACCCAGGTC GACCTGTCGG AGCTGTGCGC GCGCGGCGAA
TTTCGCCAGG ATCTGTATCA CCGCTTGAAC GTGCTGTCGC TGCACATCCC GCCACTGCGC
GAATGCCTCG ACGGTTTGAC GCCGCTGGTG GAGCACTTTC TCGATCAGGC CAGTCGACAG
ATCGGCTGCC CGCTGCCGAA ACTGGCGCCG GCGGCGATGG ACCGGCTCAG TCACTACCAT
TGGCCGGGCA ATGTGCGGCA ACTGGAGAAC GTGCTGTTCC AGGCGGTTTC GCTGTGCGAC
GGCGGCACGG TCAAGGCCGA GCACATTCGC CTGCCGGATT ACGGCGTGCG TCAGCCGCTT
GGCGATTTCT CCCTCGAAGG CGGGCTGGAC GAGATTGTTG GGCGCTTCGA GAAGGCGGTG
CTGGAGCGCT TGTATTCCGA GCATCCGAGC AGCCGGCAAC TGGGCAAGCG GCTCGGGGTT
TCCCATACGA CCATCGCCAA CAAGTTGCGT GAGTACGAAG TCGGCAAGGA CGCGTCGGAG
TGA
|
|---|
| Protein sequence | MRIKVHCQNR IGILRDILNL LVEYGINVAR GEVGGEHGNA IYLHCPNLIN IQFQALRPKF
EAIAGVFGVK RVGLMPSERR HMELNALLGA LEFPVLSIDM GGSIVAANRA AAQLLGVRVD
EVPGIPLSRY AEDFDLPELV RANKSRINGM RVKVKGDIFL ADIAPLQSEH DDSEAMAGAV
LTLHRADRVG ERIYNVRKQE LRGFDSIFQS SKVMAAVVRE ARRMAPLDAP LLIEGETGTG
KELLARACHL ASPRGQSPLM ALNCAGLPES MAETELFGYG PGAFEGARAE GKLGLLELTA
GGTLFLDGVG EMSPRLQVKL LRFLQDGCFR RVGSDEEVYL DVRVICATQV DLSELCARGE
FRQDLYHRLN VLSLHIPPLR ECLDGLTPLV EHFLDQASRQ IGCPLPKLAP AAMDRLSHYH
WPGNVRQLEN VLFQAVSLCD GGTVKAEHIR LPDYGVRQPL GDFSLEGGLD EIVGRFEKAV
LERLYSEHPS SRQLGKRLGV SHTTIANKLR EYEVGKDASE
|
|---|
| |