| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_1471 |
|---|
| Symbol | |
|---|
| ID | 3717149 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 1652414 |
|---|
| End bp | 1654615 |
|---|
| Gene Length | 2202 bp |
|---|
| Protein Length | 733 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | |
|---|
| Product | patatin |
|---|
| Protein accession | YP_347203 |
|---|
| Protein GI | 77457698 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.553855 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.134739 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCGTC TGCTGATCTG CCTGTTGCTT GGTTTCCTTC CCCTGTTCGC TGGTGTCAGC
GTCCATGCCA GTGAGGCCAC ACGCCCGAAA GTCGGCCTGG TGCTGTCCGG CGGCGCGGCC
CGTGGACTGG CGCACATCGG TGTGCTCAAG GCCTTGGAAG AGCAAGGCAT CAAGATCGAT
GCGATTGCCG GCACCAGCAT GGGCGCGGTG GTCGGCGGGC TGTATGCCTC GGGCTACAAG
ATCGACGAGC TGGAAAAACT CGCCCTGACC ATCGACTGGC AGCAGGCGCT GTCCGACGCC
CCGCCCCGTG AAGACGTACC GTTCCGGCGC AAGCAGGACG ACCGCGACTT TCTGGTGAAA
CAGAAACTGA GCTTTCGTGA CGATGGCAGC CTCGGCCTGC CATTGGGCGT GATTCAAGGC
CAGAACCTCG CGCTGCTGCT GGAAAGCCTG CTGGCCCACA CCAGCGACAC CCGGGATTTC
GACAAGCTGC CGATCCCGTT TCGCGCCGTG ACCACCGATA TCGACAACGG CGAAAAAGTG
GTGTTCCGCA AGGGCCACCT GCCGCAGGTG ATCCGCGCCA GCATGTCGAT CCCGGCGGTG
TTCGCCCCGG TCGAACTCGA CGGCCGATTG CTGGTGGATG GCGGCATGAC CGACAACATT
CCTCTCGATG TGGCCCGTGA AATGGGCGTC GACGTGGCCA TCGTGGTCGA CATCGGCACC
CCGCTGCGCA ACCGCAAGCA ACTGGTGACC GTGGTCGATG TGCTGAACCA GTCAATCACC
CTGATGACAC GGCGCAACTC CGAAGAGCAA CTGGCGACCC TGCATCCCGA TGACGTGCTG
ATCCAGCCGC CGCTGGCCAG TTTCGGCGCC ACCGACTTCG GTCGCGGCCA GGAGATGATC
GACGCCGGCT ACCGCGCGAC CCAGGCTCTG GACGTGCGCC TCGCCCGCCT CAAACCCGCG
CAATCGCAGG ACGCCGAGCT CAACGCCGCC CGCGCGCCAG GCCAGCGCAC ACCGATCATC
ACCGCGATCA AGGTCGAGAA CGACTCGAAA GTCGGCGATG ACGTGATCCG CTATTACATC
CGCCAGCACA TCGGTGAACC GCTGGACCTG GGTCGCCTGC AAACCGACAT GGGCACCCTG
TACGGCCTCG ATTACTTCGA GCAGGTGCAA TACCGCGTGG TGCACAAGGG ATCGGATCAC
ACGCTGGTGA TCAGCGCGCG GGGTAAACGT ACTGGCACGG ATTACCTGCG AGTCGGCCTC
AACCTGTCGG ATGACATGCG CGGCGACAGC GCCTTCAACC TCGGTGCCAG TTACCGCGTG
AACGGCATCA ACCGGCTCGG CGCGGAATGG CTGACCCGGG CGCAGATCGG CGATAAACAA
GAGTTGTACA GCGAGTTCTA TCAGCCGCTG GACGTGGGCT CTCGCTACTT TTTGGCGCCT
TATGCGTCGT TTGCCGCACA GAACGTCGAC TCGGTGCTGG ACAACGATCC GATTGCCCAG
TATCGCGTCG AGCGCTACGG CTTCGGCCTC AATGTTGGTC GGCAGATCGG CAACAGCGGT
GAAGTGCGCT TCGGGGTCGG CGAGGCCTGG GGCAAGGCGG ATGTGCGGAT CGGCGACCAG
GATCTGCCGA GCGAAAGTTT CAACGAAGGG TTCTACGCGT TGAAGTATTC CTTCGACTCG
CTGGACAACG TCTACTTCCC CCACGAGGGC GAAGACATCG GCCTGACCCT GGTTCAGTTC
GAACCGAGCC TGGGTTCCGA CACACGCTAC CGGCAGTGGG AGTTCAAACT GGACAAGGCC
ATGAGCAGTG GACCTGACAC GCTGATTCTG GGTGGTCGTT ACGGCCGCAC GCTGGACGAT
GCCAACGTGG TGACCTCCAG TTTCCTGCTC GGCGGCGCCC GGCAATTGTC CGGTTTCCGC
GAAGACGCGA TCTCCGGGCA GAACGTCAGT CTGATGCGGG CGGTGTATTA CCGCCGCCTC
ACTCCACGCT CCTACCTGCC GCTGGACTTC CCGTTGTACG CCGGTGCGTC ACTGGAACGC
GGCCGGGCCT GGAACAACGA CAATGAGTTC GACAGCGGCT ACATCAACGC CGCCAGCGTG
TTCATCGGCT TCGATACGCC GCTGGGGCCG CTGAATTTCA GCTATGGCCT GAACGATGCG
GATGAACAGG CGGTGTACCT GAACCTCGGG CAGACCTTCT GA
|
|---|
| Protein sequence | MRRLLICLLL GFLPLFAGVS VHASEATRPK VGLVLSGGAA RGLAHIGVLK ALEEQGIKID
AIAGTSMGAV VGGLYASGYK IDELEKLALT IDWQQALSDA PPREDVPFRR KQDDRDFLVK
QKLSFRDDGS LGLPLGVIQG QNLALLLESL LAHTSDTRDF DKLPIPFRAV TTDIDNGEKV
VFRKGHLPQV IRASMSIPAV FAPVELDGRL LVDGGMTDNI PLDVAREMGV DVAIVVDIGT
PLRNRKQLVT VVDVLNQSIT LMTRRNSEEQ LATLHPDDVL IQPPLASFGA TDFGRGQEMI
DAGYRATQAL DVRLARLKPA QSQDAELNAA RAPGQRTPII TAIKVENDSK VGDDVIRYYI
RQHIGEPLDL GRLQTDMGTL YGLDYFEQVQ YRVVHKGSDH TLVISARGKR TGTDYLRVGL
NLSDDMRGDS AFNLGASYRV NGINRLGAEW LTRAQIGDKQ ELYSEFYQPL DVGSRYFLAP
YASFAAQNVD SVLDNDPIAQ YRVERYGFGL NVGRQIGNSG EVRFGVGEAW GKADVRIGDQ
DLPSESFNEG FYALKYSFDS LDNVYFPHEG EDIGLTLVQF EPSLGSDTRY RQWEFKLDKA
MSSGPDTLIL GGRYGRTLDD ANVVTSSFLL GGARQLSGFR EDAISGQNVS LMRAVYYRRL
TPRSYLPLDF PLYAGASLER GRAWNNDNEF DSGYINAASV FIGFDTPLGP LNFSYGLNDA
DEQAVYLNLG QTF
|
|---|
| |