| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_1025 |
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| Symbol | xerD |
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| ID | 3716027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas fluorescens Pf0-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007492 |
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| Strand | + |
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| Start bp | 1188840 |
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| End bp | 1189736 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | |
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| Product | site-specific tyrosine recombinase XerD |
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| Protein accession | YP_346757 |
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| Protein GI | 77457252 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.899371 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.6007 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTGCCA TCGACCACCC ACTGATCGAC CAGTTTCTCG ACGCCCTCTG GCTGGAAAAA
GGTCTCTCCG ACAACACTCG CGACGCCTAC CGCAGCGATC TCGCGCTGTT CAACGGCTGG
TTGCAGGATA AAGGTCTCGA ACTGATCAAT GCCGGTCGTG AACTGATCCT TGACCACCTG
GCCTGGCGTC TGGAACAGAA CTACAAACCC CGCTCCACCG CGCGATTTCT CTCCGGTGTA
CGTGGCTTTT ATCGCTACCT GCTGCGGGAA AAACTGATTT CGGTCGATCC GACCTTGCGC
GTGGATATGC CGCAACTCGG TCGGCCATTG CCCAAATCCC TGTCGGAAGC CGACGTCGAA
GCGCTGCTGA AGGCGCCAGA CCTGAGCGAA GCCATCGGCC AGCGGGACCG CGCCATGCTC
GAAGTCTTGT ATGCCTGCGG TCTGCGTGTC ACTGAGCTGA TCAGCCTGAC CCTGGAGCAG
GTCAACCTGC GTCAGGGCGT GCTGCGGGTG ATGGGCAAGG GCAGTAAAGA GCGCCTTGTA
CCGATGGGCG AGGAAGCGAT TGTCTGGGTC GAGCGCTACC TGCGCGACGG TCGCGGCGAG
CTGCTCGGCG GGCGCCCCAG CGATGTGTTG TTTCCCAGCC AGCGCGGCGA GCAGATGACT
CGGCAGACCT TCTGGCACCG TATCAAGCAT CAGGCCAAGG TCGCCGGCAT CAGTAAATCG
CTGTCGCCGC ACACCTTGCG TCACGCGTTT GCCACCCACT TGCTCAACCA TGGCGCCGAC
TTGCGGGTGG TGCAGATGCT GTTGGGCCAC AGCGACCTGT CAACCACGCA GATCTACACT
CACGTCGCCC GGGCACGTTT GCAGGATCTG CATGCCAAGC ATCACCCGCG CGGCTGA
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| Protein sequence | MPAIDHPLID QFLDALWLEK GLSDNTRDAY RSDLALFNGW LQDKGLELIN AGRELILDHL
AWRLEQNYKP RSTARFLSGV RGFYRYLLRE KLISVDPTLR VDMPQLGRPL PKSLSEADVE
ALLKAPDLSE AIGQRDRAML EVLYACGLRV TELISLTLEQ VNLRQGVLRV MGKGSKERLV
PMGEEAIVWV ERYLRDGRGE LLGGRPSDVL FPSQRGEQMT RQTFWHRIKH QAKVAGISKS
LSPHTLRHAF ATHLLNHGAD LRVVQMLLGH SDLSTTQIYT HVARARLQDL HAKHHPRG
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