| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_3807 |
|---|
| Symbol | |
|---|
| ID | 8532233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 4203745 |
|---|
| End bp | 4204650 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_003261148 |
|---|
| Protein GI | 261823042 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.832757 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCGGT TTCAGGCCAT GGAAACATTC ATTCGTGTGG TCGATGCGGG TAGTTTCAAA
AAAGCGGCGG AAACCCTGCA TGTTCTGCCA TCCACCGTCA CCCGCAGCAT TAAAGAACTC
GAATCACATC TCGGCGCTCG GTTACTTAAC CGAACGACGC GAGCACTCAG TATTACGGAT
GTTGGCCTGC GCTATTACGA CAGTTGCAAA GCGATCTTAC GGGATGTGCA CGCGGCGGAA
AGCGTAACGG CACAGCAAAA GGAGGAACTA CAGGGAACGA TCAGAATCGG AGCGACACCT
TCTCTGGTCA AAAATTTCCT TATCCCGGCA CTGCCCGACT TCTGTGAACG TCATCCTGGA
ATAAGGCTAG ACTTCCACCT GGGTGATGCC ACCGTGGATA TTGTCCAGCA GGGTATCGAT
TGTGTCATCA GAACCGGAGA ACCACCATTA TCACGACTGG TCGCACGACA CCTCGGGGCG
TTCCATTGGA CTATCTGCGC TTCCCCACGC TATCTTGAAC AACATGGATA CCCCACAACG
TTAGACTCGC TCAAAGATCA TGTCGCAGTG GGCTATACCC ACAGCCGGGC AGGTCGTTCA
GTTAGCTGGG GGTTTCACGA TGAAGCTCAC ACCGTAGCAA TTCCGCTAGC AGGACAGATC
AGCGTAAATG ACACCGATGC CTATCTCGCC GCTGGCGTAG CGGGTCTGGG TCTACTACGC
ATTGCCAGCT ATATGGTGCG CCAGCAACTC TCTGATGGAC ATCTTGTCCG TCTGCTTCCT
GATCTCGAAG CACCGCTTGA ACCTATTTTC ATCCTCTACC CGCAAAGCCG CCACCTCTCG
CCGGTTATCC GCGCTTTTAT CGACTGGTGT ACCGCGCTAA TCGCGCAGGA GGCCGTGAAA
TGGTAA
|
|---|
| Protein sequence | MDRFQAMETF IRVVDAGSFK KAAETLHVLP STVTRSIKEL ESHLGARLLN RTTRALSITD
VGLRYYDSCK AILRDVHAAE SVTAQQKEEL QGTIRIGATP SLVKNFLIPA LPDFCERHPG
IRLDFHLGDA TVDIVQQGID CVIRTGEPPL SRLVARHLGA FHWTICASPR YLEQHGYPTT
LDSLKDHVAV GYTHSRAGRS VSWGFHDEAH TVAIPLAGQI SVNDTDAYLA AGVAGLGLLR
IASYMVRQQL SDGHLVRLLP DLEAPLEPIF ILYPQSRHLS PVIRAFIDWC TALIAQEAVK
W
|
|---|
| |