| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_3755 |
|---|
| Symbol | pdhR |
|---|
| ID | 8532181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 4147819 |
|---|
| End bp | 4148583 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator PdhR |
|---|
| Protein accession | YP_003261097 |
|---|
| Protein GI | 261822991 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000830263 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATACA GCAAGATCCG TCAGCCCAAA CTGTCAGATG TGATAGAACA GCAGTTGGAG
TTTCTGATCC TTGAGGGAAC CTTGCGCCCC GGCGAGAAGC TCCCACCGGA GCGTGAACTG
GCAAAACAGT TCGATGTTTC CCGCCCTTCT CTGAGAGAAG CCATTCAACG CCTGGAAGCC
AAAGGTTTAC TTTTGCGCCG TCAGGGTGGT GGTACCTTCG TTCAAGCCAA TCTATGGCAA
AGTGTCAGCG ATCCGCTGGC AGAATTACTG AGCACACATC CCGAATCACA ATTCGATCTT
CTGGAAACGC GTCATGCGCT GGAAGGCATT GCTGCCTACT ATGCTGCGTT GCGTGGCACA
GAGTCGGATT TGCAACGTAT CCGGGACTGC CATGCCGTGG TTGAGAAGGC GAAGGAAGCG
GGCGATCTGG ACGCCGAGTC AGAAGCCGTT ATGCAATATC AGGTTGCTGT AACAGAAGCC
ACGCATAATG TGGTTTTGTT GCATTTGGTG CGCTGTATGG GGCCGATGCT CGAACAGAAC
GTGAGGCAGA ATTTTGAATT GCTTTATTTG AGCCGTGAAG TGCTGGCTCA GGTGAGCATT
CATCGCGCCA GCATTTTTGA GGCGATTGTT GCCCGTGAGC CGGAGAAGGC GCGCGAAGCA
TCACACCGCC ATCTGGCGTT TATTGAGGAA GTATTGCTGG ATCTTAACCG GGAACATAGT
CGGCGCGAAA GATCGCTGCG TCGGCTCCAG CAACGCAAGG ACTGA
|
|---|
| Protein sequence | MAYSKIRQPK LSDVIEQQLE FLILEGTLRP GEKLPPEREL AKQFDVSRPS LREAIQRLEA
KGLLLRRQGG GTFVQANLWQ SVSDPLAELL STHPESQFDL LETRHALEGI AAYYAALRGT
ESDLQRIRDC HAVVEKAKEA GDLDAESEAV MQYQVAVTEA THNVVLLHLV RCMGPMLEQN
VRQNFELLYL SREVLAQVSI HRASIFEAIV AREPEKAREA SHRHLAFIEE VLLDLNREHS
RRERSLRRLQ QRKD
|
|---|
| |