Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pecwa_3549 |
Symbol | rumA |
ID | 8531975 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium wasabiae WPP163 |
Kingdom | Bacteria |
Replicon accession | NC_013421 |
Strand | - |
Start bp | 3907350 |
End bp | 3908699 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | |
Product | 23S rRNA 5-methyluridine methyltransferase |
Protein accession | YP_003260892 |
Protein GI | 261822786 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.029326 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGCAAT TCTACTCTCC AAACCGGCGT GTGACGACCC GGAAAGCAGT TCCAGCGAAA AACCTCACTG TCACGGTGGC GTCACTTGAC CCGTTTGGGC AGGGCGTAGC GCGTCACGAA GGCAAGACGG TTTTTGTCAC AGGTGTGCTG CCGGGAGAGC AGGCCGAGGT GCAACTGACG GAAGAGAAGC GTCAGTTTTC ACATGCCAAA CTTAAACGCC TGTTGACGCC TAGTCCGCAG CGCGTTGAGC CGCAATGTCC TCATTTTACT CGCTGTGGCG GTTGCCAACA GCAGCATGCG GAAATTACTC TGCAGCAGAG CAGCAAAACC GCAGCATTGA TGCGCCTGAT GACGCGAGAA ACGGGCGTTG AACTGCCAGC CGCATCGCTG ATCGCTGGCA CACCTTATGC CTATCGGAGA CGTGCGCGGC TTGCGTTATA CTTTCAGGCA AAAGAGCAGC GGCTATTGAT GGGCTATCGG CAGCCCAATT CTCACGATCT GGTAGATATC AAGGCCTGTC CGGTATTGCG ACCAGAGCTT GAAGCGCTGC TGCAACCGCT GCGCGAATGT CTGAGTCGAC TAAAAGCGGT GAAGCGTCTT GGGCATGTGG AACTGGTGCA GGCGGAGAAC GGTCCGCTGC TGGTGCTGAG GCATCTTGAT CCACTGCATC CATCGGATGA GCAGGCGTTG CGTGATTTTG CCCAGCAGCA GAGTGTCTCG GTTTATCTGG CACCGGATGC CGACTCGTTG ACGTGCCTAC ATGGCGAAGA GCCGGTTTAT CACGTCGCCG GGCTGACGCT GGCATTTAGC CCACGTGATT TTATTCAGGT CAATGACGCG GTTAACCAGC AGATGGTCGC GCAGGCACTG GCGTGGCTGG ATGTACAACC GCAGGATAAA ATATTGGACC TGTTTTGCGG TATGGGTAAT TTCACGCTGC CGCTGGCACA GCGTGCCGCC AGCATTGTCG GTGTGGAGGG GGTTACCGCA CTCGTCGAGA AAGGGCGCGA AAATGCCCGG CGCAATGCGT TGTCCAATGT CACATTTTTT CACCAAAATC TTGAGGATGA CGTCACACAG CAACCGTGGG CGGCTCAAGG TTTTGATAAG ATATTACTTG ATCCGGCACG TGCAGGTGCG GCAGGCGTGA TGGAGCAAAT AACCAGATTG GCACCGAAAC GGGTGGTGTA TGTTTCCTGT AACGCCACGA CGCTAGCACG CGACAGTAAA GTATTACTCG CAGCCGGTTA CCGGCTGGCG AATGTCGCAA TGTTGGATAT GTTTCCACAT ACCGGACACC TTGAATCGAT GGCACTGTTT TTGCACGATT CCGGCACGCG GAAGGCTTAA
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Protein sequence | MAQFYSPNRR VTTRKAVPAK NLTVTVASLD PFGQGVARHE GKTVFVTGVL PGEQAEVQLT EEKRQFSHAK LKRLLTPSPQ RVEPQCPHFT RCGGCQQQHA EITLQQSSKT AALMRLMTRE TGVELPAASL IAGTPYAYRR RARLALYFQA KEQRLLMGYR QPNSHDLVDI KACPVLRPEL EALLQPLREC LSRLKAVKRL GHVELVQAEN GPLLVLRHLD PLHPSDEQAL RDFAQQQSVS VYLAPDADSL TCLHGEEPVY HVAGLTLAFS PRDFIQVNDA VNQQMVAQAL AWLDVQPQDK ILDLFCGMGN FTLPLAQRAA SIVGVEGVTA LVEKGRENAR RNALSNVTFF HQNLEDDVTQ QPWAAQGFDK ILLDPARAGA AGVMEQITRL APKRVVYVSC NATTLARDSK VLLAAGYRLA NVAMLDMFPH TGHLESMALF LHDSGTRKA
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