Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pecwa_3454 |
Symbol | |
ID | 8531874 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium wasabiae WPP163 |
Kingdom | Bacteria |
Replicon accession | NC_013421 |
Strand | - |
Start bp | 3795317 |
End bp | 3797284 |
Gene Length | 1968 bp |
Protein Length | 655 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_003260798 |
Protein GI | 261822692 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCCAACA GTACAGGATT ACAGTTCACC GTAAAGGTCG GCGCATTGGC GGCCGGCACC TTTGCGGTGG TGGATTTCAG GCTGGATGAG GGGCTGAATC GGCCTTTCAG CCTGTCGCTG AGTCTGGCGA GCGTGTTGCC GGATGTGGAT TTTGGCGCGG TGCTGGACCA ACCGTGCGAG CTGATGATTT GGTATGAGGG TGAGTTGAAA CGCCGGATCA GTGGGATTAT CAGTGGTTTC ACACAGGGCG ACACCGGTTT TCGCCGCACC CGCTATCAGG CGGAAGTGCG TCCGGAGCTG TGGCGGTTGG GATTACGCAC CAACGCCCGT ATCTTTCAGG CCCAGAAGCC GGACGCGATT ATCGGTACTC TGCTGGAAGA AGCCGGCATT ACCGACTACG CCTTTTCGTT ACGTCATGAC CATGCCCCGC GCGAGTACTG CGTTCAGTAC CGGGAAAGCG ATTTGGCGTT TGTCACCCGA CTGGCGGCAG AGGAAGGCTT GTACTTCTTC CACGAGTTTG AGGAAGGCAA ACACCGTGTC GTCTTTGCCG ACGATGCGGG AGCGCTGGCT AAGGGCCCTG AGCTGTTCTT CAATTTGGCG GCGCAGGGGC TGAGCGAGGG GGAATACATC CGGCGTTTCC ACTATGCGGA GCGGGTGAGC ACGGCAGAAG TGGAGTTGAA GGATTACAGC TTCAAGACAC CGGCCTACGG GCTGTCACAT AAGAAGATGA GTAGCGAATT GGATCACCAA CGTGAAAGTT ATCAGCATTA CGACTATCCA GGACGTTATA AACAAGATCC GAGCGGCAAA GCGTTCAGCA ACTACCGGCT GGATGCGCTG CGCTCTGGAG CGGTGACGAG CGAAGGGGAA TCGAACTGCG CAGGGCTGAT GCCGGGCAAC ACGTTTACTC TGACGGAACA CCCGAATGCG ACGCTGAATA CGGTGTGGCA AACGGTGAGC GTGATGCATA TCGGGCAGCA GTCGCAGGCG CTGGAGGAGG AAAGCGGCGG TGAGCCGACG ACCATGAGCA ACAGCTTTGC GGTTATCAGT GCGAAAAAAA ACTGGCGGGC CGTCATGCCG TACAAACCGA TGGTGGACGG CCCGCAGATT GCGAGGGTAG TGGGGCCGGC TGGCGAAGAA ATCTACTGCG ACAAGTACGG GAGAATCAAA CTGCAATTCC CGTGGGACCG TTATGGGGCG AATAATGACC AGAGTTCCTG CTGGGTGCGT GTTAGCCAGG GCTGGGCGGG CGGCCAATAC GGACTGATCG CTATCCCGCG TATCGGTCAT GAAGTGATTG TTAGCTTCCT CGAAGGTGAC CCGGATCAGC CGATTGTCAC TGGACGTACC TTCCACGCGA CAAATCCAGC GCCGTATCCG CTGCCAGCCA ATAAAACACG TACCACGCTA CGTTCAAAAA CACACAAAGG AAAAGGCTTT AACGAACTCA GTTTTGAGGA CGCGACCGAT AACGAAGAGA TCTTCCTTCA TGCCCAGAAG AACATGGCAG TACGGGTACT GAATTCTAAA GATGAGCGAG TGGACTATAA CCGAACAACC AGTATTGGGC ATGATGAGGC GCTGGTGGTC GCCAATGACC GTAAGATTAC GGTGGAAGGT AATCAGGATC ACAAAATCAC AGGCAATAAT TTATCGCTGA CGGAAGGCGA TCGAGGCATA CAGGTTAAGG GCGATTTGGC GCAGAAAATC AGCGGCGTGT TCAGCGTGGA CAGCAATGGC GATCTGACGC TGCAAAGTGG CAGCAAACTG ACACTCCGAG TTGGAGGCAG CTTTGTGGTT ATCCACGCCG GAGGCGTTGA CATCAAAGGG CCTGCTATCA ACCTGAACTC AGGCGGCAGC CCAGGCGACT TGGCACTACC CGCCGATCCG GCGATATTGA AAGCGGCGGC GGCACAGGGA ACGATGTTTG TGGCGCATTG TCCGGCAAAG GAAAAAAAAG GTGAGTGA
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Protein sequence | MANSTGLQFT VKVGALAAGT FAVVDFRLDE GLNRPFSLSL SLASVLPDVD FGAVLDQPCE LMIWYEGELK RRISGIISGF TQGDTGFRRT RYQAEVRPEL WRLGLRTNAR IFQAQKPDAI IGTLLEEAGI TDYAFSLRHD HAPREYCVQY RESDLAFVTR LAAEEGLYFF HEFEEGKHRV VFADDAGALA KGPELFFNLA AQGLSEGEYI RRFHYAERVS TAEVELKDYS FKTPAYGLSH KKMSSELDHQ RESYQHYDYP GRYKQDPSGK AFSNYRLDAL RSGAVTSEGE SNCAGLMPGN TFTLTEHPNA TLNTVWQTVS VMHIGQQSQA LEEESGGEPT TMSNSFAVIS AKKNWRAVMP YKPMVDGPQI ARVVGPAGEE IYCDKYGRIK LQFPWDRYGA NNDQSSCWVR VSQGWAGGQY GLIAIPRIGH EVIVSFLEGD PDQPIVTGRT FHATNPAPYP LPANKTRTTL RSKTHKGKGF NELSFEDATD NEEIFLHAQK NMAVRVLNSK DERVDYNRTT SIGHDEALVV ANDRKITVEG NQDHKITGNN LSLTEGDRGI QVKGDLAQKI SGVFSVDSNG DLTLQSGSKL TLRVGGSFVV IHAGGVDIKG PAINLNSGGS PGDLALPADP AILKAAAAQG TMFVAHCPAK EKKGE
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