| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_3087 |
|---|
| Symbol | tolB |
|---|
| ID | 8531496 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 3365027 |
|---|
| End bp | 3366319 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | translocation protein TolB |
|---|
| Protein accession | YP_003260436 |
|---|
| Protein GI | 261822330 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000560471 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAG TACTGAAAGT TGCAGTAAGC TTTTTAATGC TGTGGGCAGC GGTGCTGCAC
GCGGAAGTAC GTATAGAGAT TACCCAAGGG GTAGACTCTG CACGCCCAAT CGGTGTGGTT
CCGTTCAAAT GGGCCGGGCC GGGCGCTGCG CCTGAAGACG TAGGCGGTAT CGTGGGTGCT
GATTTACGTA ATAGCGGTAA ATTCAACCCG ATCGACGCAA ACCGTATGCC ACAGCAACCT
GCAACGGCAT CTGAAGTGAC GCCTGCTGCA TGGACGGCGT TGGGCATTGA TGCGGTGGTT
GTTGGTCAAG TTCAACCGAG TGCTGATGGT AGCTATCTGG TTTCTTACCA ACTCGTCGAT
ACGTCGGGTA ACCCAGGGAA CGTACTGGCT CAGAACCAGT TCAAAGTAAC CAAACAGTGG
TTGCGCTATG CCGCGCATAC AGCCAGTGAT GAAGTGTTTG AAAAACTGAG TGGTATCAAA
GGTGCATTCC GTACTCGTAT TGCTTACGTG GTTCAGACCA ACGGTGGTCA GTTCCCTTAT
GAACTGCGCG TTGCCGACTA TGACGGCTAC AATCAATTCG TTGTTCATCG TTCACCACAG
CCGCTGATGT CTCCGGCCTG GTCCGCCGAC GGTAGCAAAC TCGCCTATGT CACGTTTGAA
AGCGGTCGTT CTGCGCTGGT TATTCAAACG CTGGCCAATG GCGCGATCCG TCAGGTTGCT
TCCTTCCCAC GTCATAACGG TGCACCTTCT TTCTCTCCTG ATGGCAACAA ACTCGCATTT
GCTCTGTCTA AGAGTGGTAG CCTGAATCTG TATGTGATGA ATCTGGGATC GGGTCAGATC
AGTCAGGTGA CTGATGGCCG CAGCAATAAC ACGGAACCAA CCTGGTTCCC AGATAGCCAA
ACCTTGGCCT ATACTTCAGA CCAGGCTGGT CGTCCTCAGG TTTACAAAGT TAATGTTAAC
GGCGGTGCTC CACAGCGTGT GACCTGGGAA GGTTCTCAGA ACCAGGACTC TGATGTGAGC
GCCGACGGGA AATTTTTGGT AACGGTGGGC TCGAATGGTG GGGCTCAGCA TATTTCCAAA
CTGGATCTGG TAACGGGTGC CGTACAAGTA TTAACGGACA CGTTCCTGGA CGAAACGCCA
AGCATCGCAC CAAATGGCAC GATGGTGATC TACAGTTCTA AACAAGGGCT GGGTTCAGTG
CTACAACTGG TTTCGACCGA TGGTCGTTTC AAAGCGCGTC TTCCGGCTAC TGATGGACAG
GTTAAATTCC CTGCCTGGTC GCCGTATCTA TAA
|
|---|
| Protein sequence | MKQVLKVAVS FLMLWAAVLH AEVRIEITQG VDSARPIGVV PFKWAGPGAA PEDVGGIVGA
DLRNSGKFNP IDANRMPQQP ATASEVTPAA WTALGIDAVV VGQVQPSADG SYLVSYQLVD
TSGNPGNVLA QNQFKVTKQW LRYAAHTASD EVFEKLSGIK GAFRTRIAYV VQTNGGQFPY
ELRVADYDGY NQFVVHRSPQ PLMSPAWSAD GSKLAYVTFE SGRSALVIQT LANGAIRQVA
SFPRHNGAPS FSPDGNKLAF ALSKSGSLNL YVMNLGSGQI SQVTDGRSNN TEPTWFPDSQ
TLAYTSDQAG RPQVYKVNVN GGAPQRVTWE GSQNQDSDVS ADGKFLVTVG SNGGAQHISK
LDLVTGAVQV LTDTFLDETP SIAPNGTMVI YSSKQGLGSV LQLVSTDGRF KARLPATDGQ
VKFPAWSPYL
|
|---|
| |