| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_3038 |
|---|
| Symbol | |
|---|
| ID | 8531444 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 3308508 |
|---|
| End bp | 3310241 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | Integral membrane protein TerC |
|---|
| Protein accession | YP_003260390 |
|---|
| Protein GI | 261822284 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGAC TTATCCTGTC ACCTATCTGG TCGGTATTTG TCCGTGAGCA CTATTGCGGT
AAAGAATATC CCCGCAAATT CTGGTTCATC TACGCGCGCC CTGATACGCT ATCAAGGTTA
CGTTCATTTA AAGGTGAAAA AATAACTATG GAGTGGATCG CTGATCCAAC GATATGGGCC
GGGTTGGCCA CGCTGGTTGT CCTGGAACTG GTTCTGGGCA TTGATAATCT TATCTTCATC
GCCATTCTGG CTGAGAAACT CCCAAAAGAG CAGCGTGACA AAGCCAGAGT CGTCGGTCTG
TTACTTGCCC TAATTATGCG ACTGGGCCTG CTGGCGTCCA TTTCCTGGCT GGTGTCGTTA
ACTACCCCTC TCTTCACGTT TATTGGGCAC ACATTCAGCG CTCGCGATGT CATCATGCTG
GTTGGCGGGT TATTTCTGCT TTTTAAAGCT ACCATGGAGC TCAACGAACG CCTCGAAGGA
AAAGATGAGG AGCAGCAAGC CCACCGTAAA GGTGCTCGTT TCTGGCCGGT AGTCGCCCAG
ATTGTAGTAT TGGATGCCAT ATTCTCGCTG GATTCCGTGA TTACCGCTGT CGGCATGACT
GACCATCTGC TGGTCATGAT GTCCGCCGTG ACGATCGCCA TCTTCCTGAT GTTGCTGGCC
AGTAAACCAC TGACCCGTTT TGTCGCTGAA CACCCGACCA TCGTTATCCT GTGCCTCAGC
TTCCTGCTGA TGATTGGTTT TAGCTTGGTG GCGGATGCGT TTGGTTACCA CATTCCCAAA
GGCTATCTCT ACGCGGCGAT AGGCTTCTCA GTACTGATTG AGATGTTGAA TCAGGTTTCC
CTGTTTAACC GTCGACGCTT TCTTTCTTCT TCCATTCCAC TGCGTCAGCG GACTGCAGAG
GTCGTTTTGC GTATTTTGCG CGGTAGCCAT GAAGAAGCTG AACTGGACAA TCAAAACTCG
TCGATGATTG CAGACAACAC CCGGTCAGGT CAGGAAGTCT TCAATATTCA GGAACGCCGG
ATGATAAAGC GGGTATTGGG AATGGCCCAA CGAACTATCA GTAGCATCAT GACGTCGCGG
CATGATATCG AGTCGGTTGA GCTGGACATT ACGCAGGAGG CGCTCTCTAA ACTGTTAACC
AGCAACCCGC ATTCCCGGCT TGTGGTAACC GACAGCAATA CCTCTGACGA GCCGCTAGGC
ATCATAAATG TTGCCGATTT ACTCCAGCAG CAGCTAAACC GCGAACCATT TAACCCACGA
ATTCTGATCC GTCAGCCATT GGTTTTCCCT GAGCAACTCT CGCTTTTACA AGCGCTGGAA
CAGTTTAGAG AAGCAAGAAC GCATTTTGCA TTTGTCGTTG ATGAGTTTGG TTCGATGGAA
GGGATTGTCA CATTAAGTGA CGTGATGGAA ACCATAGCGG GCAACTTACC GCGCGAAGGG
GAAGATCGCG ATGCTCGCCA CAGTATTCAG CAGAATGATG ATGGCAGTTG GACCGTAAAT
GGTTATATTC CACTTGAAGA CCTAACGATG TATGTTCCGC TGGCGCTGGA CGCAAAACGT
GAATACTACA CGTTGGCAGG GCTGCTGATG GAACACGCCC AGCGGATTCC ACAAGTGGGC
GATACGCTAT CAATCGATGG TTACCAGTTC ACTATTTTGG CGGTGGAAAG CCACCGTATT
GTGGAAGTCC GCATCACACC AAACGACGAA CCACAGACTG ACTTTGAAGT GTGA
|
|---|
| Protein sequence | MTRLILSPIW SVFVREHYCG KEYPRKFWFI YARPDTLSRL RSFKGEKITM EWIADPTIWA
GLATLVVLEL VLGIDNLIFI AILAEKLPKE QRDKARVVGL LLALIMRLGL LASISWLVSL
TTPLFTFIGH TFSARDVIML VGGLFLLFKA TMELNERLEG KDEEQQAHRK GARFWPVVAQ
IVVLDAIFSL DSVITAVGMT DHLLVMMSAV TIAIFLMLLA SKPLTRFVAE HPTIVILCLS
FLLMIGFSLV ADAFGYHIPK GYLYAAIGFS VLIEMLNQVS LFNRRRFLSS SIPLRQRTAE
VVLRILRGSH EEAELDNQNS SMIADNTRSG QEVFNIQERR MIKRVLGMAQ RTISSIMTSR
HDIESVELDI TQEALSKLLT SNPHSRLVVT DSNTSDEPLG IINVADLLQQ QLNREPFNPR
ILIRQPLVFP EQLSLLQALE QFREARTHFA FVVDEFGSME GIVTLSDVME TIAGNLPREG
EDRDARHSIQ QNDDGSWTVN GYIPLEDLTM YVPLALDAKR EYYTLAGLLM EHAQRIPQVG
DTLSIDGYQF TILAVESHRI VEVRITPNDE PQTDFEV
|
|---|
| |