| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_2434 |
|---|
| Symbol | |
|---|
| ID | 8530835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 2630966 |
|---|
| End bp | 2635012 |
|---|
| Gene Length | 4047 bp |
|---|
| Protein Length | 1348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | RHS protein |
|---|
| Protein accession | YP_003259802 |
|---|
| Protein GI | 261821696 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAG GAAACACGAT TGGTAAATTA CAGTATGCAC CTGCACCACA GGGCCATGTT
TCGGCGGGCA GTGCCAACCC GCCGAAACAG AAAACCTGGT GGAGTCGCTA CGGTGACTGG
GTGCATACCG GTCTGGATGT ATTAGGTGCA GTGCCGATTA TCGGTGCCGT TGCGGATGGG
GCCAATGCTG CCATTTATAC CGCCGAAGGT GATTACGGCA ATGCGGCGCT GTCGGCGGCA
TCCGCTGCCG CTAACTTTGT TCCGGGCGGG GGAGCGGCTT TCAAAGCGGG CAAGCTGGCG
GCGAAAGCGG GTAAAGTACT AGACGCGGCG AAAGCGGGTA AAAAAGTGGT AAACGAAGGT
GTAACGCAGG CAGAAAAGGC GGCTGTGAAA GCGGAAAGCA AGGCGATAAA AAAGGAAACC
GGTGAGGCCA TTAAGGCCAA GAAAGCCGGC AGTGAAAAAG GCGGTAGCGA TAAAGGCCAT
ACGCAGAAAA ATACCGAGCC GTGCAAAATC CTACAAAGCC CGTTGCCGCA GGTGGATATG
GCGATTGGTA GTCCGGTCAA CCCATTGCTG GGTATCAAGC TGTTGTTTGA GATGGAAGAC
AACGATTTCT CCTTCCCGGC ATCTGTGCCG CTCAACTGGC AGCGTTACTA CTTCTCCGAC
GAGATCGGCA ATGGCTGGCT GGGGCAGGGC TGGTCGCTGC CATTTTCTCA GGAAGTGCGT
CAACACAATC AGCAGTTGGT GCTCATTGAT GAGCAGGGGC GCGAGATTGC TTTCCCCTAT
CCGCAACTCG GTCATGAGCC GCAGTTGCAT CGCTACGAAC AGCTTGAATT ATCCCAGCCT
CAACCGGGTG AATTCTGTAT TTCCAGCGCT GACGGTGGGC AGCACTGGCA CTTTGCCCAT
CGGGTCGGCA CGGGACGCTG GCTGCTCTCA GCGATCGGTG ACCGCCACAA CAATCGCCTG
ACGCTGTACT ACAATGCACA GCATCTGCCC GTCCAGGTTG AAGACAGCGC CGGTCGCAAC
TTCCACATCC ACATTACCCA GATCAGTCTG GCCGATGGCA GCACGGTGGA TCGTATTACC
GGCGTCAGCG TATGCCATCC GTCCGAGCCT CTCAACGTAG AAAAACTCTG TAGCTATGAC
TACTCGCCGC AGGGCGACCT CATTGCGGTA CGCAATGAAC AGGGTGACGT GCTGCGCGAG
TTCCGCTATC GCAATCACAT GATGGTGGCA CACCGTCGCG CGGGCGAAAT GGCGTGCTTC
TATCATTACG ACAAACATAC CCCCGACGGC AAGGTGCTGG CGCATCGCGA CAGCCTCGGT
GGTGAATGGC GCTTCGAATA TGGTCGCAAC AGTACCACCG TCACGGATGT GCTGGGGCGT
GTGACGCATT ACGACGTTGA TGATCATCAG GAACTGATCG GCTACCGGGA CGCGATGGGC
GGTTATATCC GCATTCGGCG CAACATGCGC GGCCAGATGA TACAACTCAC CGATCAAGCT
GAGCGCATAA CGCGTTACCG CTACGACGAG CGGGGTAACT GCACGGCGGT GAGCGAGCCA
GACGGGCAGA CCACGCGTTT CGACTATCAC GAACGCTGGA ATCTTCCGGT ACGTGTTACC
GATATGCTGG GCGGAACGCG CGAATATCAC TATGACATCG CGGGTAATCT TATCCGTATG
ATGGATGAGA TAGGCCGCAT CACAGAATAC AACCATGATG ATCGGGGCAA TCTGGTGCGC
ATCCGCGACG CTGCGGCGGG CGTGCAGCAA CTGTGCTGGA ATAGTGCTGA TTTTCTGGTC
AGTCATACTG ACTGTTCTGG GCGCATCACC ACGTTTGAGT ACGATAAATA CGGCTGGCTG
AAGCAACAAA CCGATGCCGC AGGTCATCAT ACCACCCTGT ATCACGGTCG TGATGGCCAG
CCACAGCGCG TCGTGCACGC AGACGGCAGC ACCGAGCGGG CAGAGTTTGA CCGCTGGCGG
CGGCTGACGG CCTGGCATGA TGCCCAGGGA CAGATTACGC GATGGACACT AGCGGCTGAT
GGTCTGCCGC TGACACGCAC AGATGCACTG GGGCACCAGG TCGGTTACGA GTACGACCAC
GCGCGCCGCC TGACGGCGCT CATCAATGAA AACGGTGCCC GCCACACCTT CAGTTACGAT
GCGCGGGATA ATCTAGTGTG CGAACGTGGT TTTGACGGCA ACACGACACG CTATGAATTC
GATGACGGCG GCTATCTACA GGCTCGCACG GAGGACGGTG ACGGCCGTGG GCCGGGTATC
CGTACCCGTT ACCAGCGAGA TGCCGCCGGA CGACTGCTGG AAAAATTGAC GGCACGCAGC
GGTGATGCCC GTTGGCAACG GACCCGCTAT GGCTATGATG CGCTCGGTCG TCTCATCGCT
GGCGTTAACC ACGGTGGCCG GGTAGAGCTG GAGTGGGACG ATGCTGGGCA GTTGACGGCT
GAGCGCACCC TGACGCGTGG CGTCAGCCAT GAACTGAGCT ATCAGTACGA TGAACTGGGC
AATTGCACAC ACACCCGGTT GCCGGACGGC CACGAGCTGA AGCACTTCTA TTACGGCAGC
GGCCATCGTC TTCAGGTCAA TCTCGGCAGT CGGGTCATCA GCGAAAGCGA ACGTGACACG
TTGCACCGGG AGGTGCGTCG AACGCAAGGT GCCATCACTA GCGACTACGT GCACGATGAG
ATGGGGAGAT TGGTGAGCCA GCGTGCCGGA GGCGAGGGGA AGACTACGGT GGCACGCGAT
TACGTCTGGC GGCGCGACGG GCAACTGATG CAGATGGTGG ACAAATACAC TGGCGACCAC
CGTTACGAGT ACGACGCACT GGGGCGTCTG ACACGGTCAG GCGATGAGCG ATTCGCCTTT
GACCCGGCGC ATAATCTGCT GAGCAGCGCT CAGGCACAGC CGTTGCCGGA TAACAGATTG
CAGGTGTTTG AGGACAAGCG CTGGAAGTAT GACAATTTTG GCAACGTTGC CGAAAAGCAT
ATTGGCCGAC ATACAGTGCA GCAGTTCAGT TGGAACGCGG AGCACCAACT GGCGGAAGCG
ATCAGCACAC GCAACGGTAC GGCTCAGCGC ACGACTTACG GTTACGACGC CTTTGGCCGC
CGCAGTTGGA AGCGCGATAC CTTCGGTATA ACGCACTTCA TCTGGGACGG GAACCGTCTG
CTGAGTGAAA TTTGTGGCTC GCGTCATCAT CTGTGGATTT ACGGAGATGA GGGCTTTGCG
CCGCTGGCGC AGGTGAGCCT ACAGCAGGGG GAAACGGAGC ACGAGGCGCA GGTATACTGG
TATCACAACG ACGTTTCCGG CCTGCCGCGT GAGATGACGG GTCAGGACGG GGGCCTGGTC
TGGCGTGCAG AATACCGGGT GTGGGGCAAC ACAGTGCGGG TGGAGCAGGT TGAAGTGCCG
CATTCTGAGC CGATACACCA ACCGCTGCGC TATCAAGGGC AGTATTTTGA CGCGGAAACA
GGCTTGCACT ACAACCGGTT TAGATACTAT GATCCAGACG CGGGCCGGTT TGTCAGTCAG
GACCCGATAG GGCTAGCGGG TGGGATTAAT CTTTATCAGT ATGCGCCGAA TCCAATCACA
TGGATCGACC CTTTAGGACT CACTCCTTGT ATGGGGCTAC CATCCAGTCG TAAGGCCGGA
GGTACTGGTG GTAAGTATGA TCCGATGAAA GGCCAGGGGC TGTATGTGTT AGCAGAGAAT
GGCAAGATTA AATATGTTGG CCGGGGAGAT GTTCATTCCC GCTTAAATAT TCATGCTAAT
ACCCCAGGCA AATCTCATTT AGAACAGTTT ATTATATCTG ATAATAATCT CACAAAAGCT
GAAGCTAAGT TATTGGAGCA AAAAATCATG GATCTTCATG GTGGTGCTAA ATCTACAAAT
CCAGTGACTA ATTTGCTTAA CAAAATTAGA TCTTATAGTC CTAGTAATCC AAATGCTGGT
AGTTACGATG TCGCGGGACA TAGTTCTGAT TGGGGTGGTA AAGTATTCGG TGATATTATG
GGTAAAATAA ATGGGTTGGG TTTATAA
|
|---|
| Protein sequence | MATGNTIGKL QYAPAPQGHV SAGSANPPKQ KTWWSRYGDW VHTGLDVLGA VPIIGAVADG
ANAAIYTAEG DYGNAALSAA SAAANFVPGG GAAFKAGKLA AKAGKVLDAA KAGKKVVNEG
VTQAEKAAVK AESKAIKKET GEAIKAKKAG SEKGGSDKGH TQKNTEPCKI LQSPLPQVDM
AIGSPVNPLL GIKLLFEMED NDFSFPASVP LNWQRYYFSD EIGNGWLGQG WSLPFSQEVR
QHNQQLVLID EQGREIAFPY PQLGHEPQLH RYEQLELSQP QPGEFCISSA DGGQHWHFAH
RVGTGRWLLS AIGDRHNNRL TLYYNAQHLP VQVEDSAGRN FHIHITQISL ADGSTVDRIT
GVSVCHPSEP LNVEKLCSYD YSPQGDLIAV RNEQGDVLRE FRYRNHMMVA HRRAGEMACF
YHYDKHTPDG KVLAHRDSLG GEWRFEYGRN STTVTDVLGR VTHYDVDDHQ ELIGYRDAMG
GYIRIRRNMR GQMIQLTDQA ERITRYRYDE RGNCTAVSEP DGQTTRFDYH ERWNLPVRVT
DMLGGTREYH YDIAGNLIRM MDEIGRITEY NHDDRGNLVR IRDAAAGVQQ LCWNSADFLV
SHTDCSGRIT TFEYDKYGWL KQQTDAAGHH TTLYHGRDGQ PQRVVHADGS TERAEFDRWR
RLTAWHDAQG QITRWTLAAD GLPLTRTDAL GHQVGYEYDH ARRLTALINE NGARHTFSYD
ARDNLVCERG FDGNTTRYEF DDGGYLQART EDGDGRGPGI RTRYQRDAAG RLLEKLTARS
GDARWQRTRY GYDALGRLIA GVNHGGRVEL EWDDAGQLTA ERTLTRGVSH ELSYQYDELG
NCTHTRLPDG HELKHFYYGS GHRLQVNLGS RVISESERDT LHREVRRTQG AITSDYVHDE
MGRLVSQRAG GEGKTTVARD YVWRRDGQLM QMVDKYTGDH RYEYDALGRL TRSGDERFAF
DPAHNLLSSA QAQPLPDNRL QVFEDKRWKY DNFGNVAEKH IGRHTVQQFS WNAEHQLAEA
ISTRNGTAQR TTYGYDAFGR RSWKRDTFGI THFIWDGNRL LSEICGSRHH LWIYGDEGFA
PLAQVSLQQG ETEHEAQVYW YHNDVSGLPR EMTGQDGGLV WRAEYRVWGN TVRVEQVEVP
HSEPIHQPLR YQGQYFDAET GLHYNRFRYY DPDAGRFVSQ DPIGLAGGIN LYQYAPNPIT
WIDPLGLTPC MGLPSSRKAG GTGGKYDPMK GQGLYVLAEN GKIKYVGRGD VHSRLNIHAN
TPGKSHLEQF IISDNNLTKA EAKLLEQKIM DLHGGAKSTN PVTNLLNKIR SYSPSNPNAG
SYDVAGHSSD WGGKVFGDIM GKINGLGL
|
|---|
| |