Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pecwa_1079 |
Symbol | |
ID | 8529453 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium wasabiae WPP163 |
Kingdom | Bacteria |
Replicon accession | NC_013421 |
Strand | + |
Start bp | 1166889 |
End bp | 1169486 |
Gene Length | 2598 bp |
Protein Length | 865 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | |
Product | type VI secretion ATPase, ClpV1 family |
Protein accession | YP_003258500 |
Protein GI | 261820394 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0505801 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGATTCGAA TTGAACTGCC GACACTGGTT GAACGACTCA ACCCCGTGTG CCGTCATATG CTGGAAGAAG CGGCGGCACT CTGTATTCAG CATCAGGGTG CGGAAATCCG TATTGAGCAC TTGTTGATGA AAATGCTGGA AACGCCGCTG TGTGATGTGC GGCAGATCCT CAAGCGTGCG GGCGTTGATG CGGATGAGTT GTCTTCGCTG CTGTTGCCTT CCTCCGTGGA TAAAGAATTT GACGCGGGCT ATCCCTCATT CTCCCCTCTG CTGGTGGAGT GGCTACAGGA TAGCTGGCTG CTGGCCTCTG CTGAGTTTCA GCACGTGCGT CTGCGCAGCG GCATATTGTT GCTGGTCTTG CTGCTGACGC CCAATCGCTA TGTGGCAGGC GCGGTGTCCC GCCCGCTGGC GCAGATTAAC CGTGAACTTT TACGCCAGCA GTTTGATGAG TGGGTGAAAG ATTCGGTGGA AACGGACGTC GCGGTGCAGT CCGCCACGGC CGAACAGGCA GCCGCGGCGA ACACGCAGCT CTCGCGCTAT ACGCAAAATG TGACGGAATC CGCTCGACAA GGGCAGTTGG ACCCGGTGTT GTGCCGCGAC CATGAAATCG ATCTGATGAT CGATATTCTC TCCCGTCGTC GTAAAAACAA CCCGATTGTC GTGGGGGAAG CGGGTGTTGG TAAAAGTGCG CTGATCGAAG GGCTGGCGCT GCGTATTGTG GCGGGCGCCG TGCCGGAAAG ATTACGAGAT GTAGAACTGC TTACGCTCGA TTTGGGGGCG ATGCAGGCGG GTGCGTCAGT TAAAGGCGAA TTTGAGAAAC GCTTCAAAGG TGTGATGCAG GAAGTGAAGG ATGCGCCACG CCCGATTATT CTATTTATTG ATGAAGCGCA TACGCTAATC GGGGCAGGCA ATCAGGCCGG TGGGCTGGAT GTGTCCAATC TGCTTAAGCC TGCGCTGGCG CGCGGTGAGC TGCGTACCAT CGCGGCAACC ACCTGGAGCG AATACAAAAA ATATGTCGAG AAGGACGCTG CGCTTTCCCG TCGCTTCCAG CTCGTCAAAG TCGGTGAACC GAACGCGGAA GAAGCCACGG TGATCCTGCG TGGGCTGCGC GGTATCTATG AAAAAGCACA TGGCGTCCTG ATTGATGAAG ATGCGCTTCA GGCGGCGGCG CAACTGTCGG CGCGCTATAT CTCTGGTCGC CAACTCCCCG ATAAAGCGAT TGACGTGCTG GATACCGCGA GTGCGCGCGT AGCCATTAAC CTGACGACAC CACCGCGTGC CGTCAGCCAA CTACAGACCC GTCTACGCCA GCAGGAAATG GAAATCACCC AGCTTGAGCG GCAGGCGCGC ATCGGTCTGG GCAATACCGA AGACCGCTTA GTGGAACTGC GTAATGCTCG CGAAGCCGGC GCGGCACAGT TGGTACAGTT AGAAGCCGAT TGGCAGCAGC AGAAAACGCA GGTTCAGCGC GTGATTGAAC TGCGCACGGC GTTGCTGGAT GAAGATCAAG CCGTCGATTT CGATGCTGTG TCGGCTGCGG CGGAACTGGC GGACTGCGAA CAGGCGCTGG AAGCGTTGCA ACAATCCTCC GTGCTGGTCT CTCCTCACGT TGATAAAACA CAGATTGCTG CCGTGATAGC CGAGTGGACG GGCGTGCCGC TTAACCGAAT CTCGCAGGGT GAAATGGATA TCGTCACGCG CCTGCCTGAA TTCCTGGGTG AAACGATTAA AGGACAGCAG TTGGCGATTG CTCAATTGCA TAAACATTTG CTGACCGCGC GTGCGGATCT TCGTCGTCCT GGGCGTCCGT TGGGGGCTTT CCTGCTGGTG GGGCCGAGCG GTGTGGGTAA AACGGAAACC GTGGTCCAGA TTGCCGACCT GATGTTTGGC GGACGTAACT ATCTGACCAC CATCAATATG TCGGAATATC AGGAGAAACA TACCGTTTCA CGCCTGATCG GTTCGCCGCC GGGCTACGTC GGGTTTGGTG AGGGGGGCGT ATTGACCGAA GCGATCCGCC AGAAACCGTA TTCCGTGGTA CTGCTGGATG AAGTGGAAAA AGCACACCCG GATGTCCTGA ATCTGTTCTA TCAGGCCTTT GATAAAGGTG AACTGGCCGA CGGTGAAGGC CGGGTCATCG ACTGCCGCAA TGTGGTGTTT TTCCTGACGT CCAATCTCGG GTTCCAGACG ATCGTGAACT ACGCCGAGCA GTCGGATGTG TTGCTGGATG CGCTCTATCC TGAGCTGGCG GCTTTCTTTA AACCTGCACT ATTGGCGCGT ATGGAAGTCA TCCCTTATCT GCCGCTGGCG CATGCCACCA TGGTCGAGAT CGTACAGGGT AAATTGTCGC GTCTGGTTTC TCTGCTGCAA CAGCGCTTTA GTGCTGAGGT CATCATTGAG GATGAGGTGC CGGAAGAAAT TCTCCGGTTG GCAAACCGCA GCGAAAACGG GGCGCGTATG CTGGAGTCAG TGATTGATGG GGCATTGCTG CCACCGGTAT CACTACAACT ACTGCAACGA CTGTCTGCGG GAGAACCCGT CAGCCGTATT CATTTCCGCG TCGAAGCCGG CCAGTTCCAG ACCGAGGTGG AGGGCTGA
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Protein sequence | MIRIELPTLV ERLNPVCRHM LEEAAALCIQ HQGAEIRIEH LLMKMLETPL CDVRQILKRA GVDADELSSL LLPSSVDKEF DAGYPSFSPL LVEWLQDSWL LASAEFQHVR LRSGILLLVL LLTPNRYVAG AVSRPLAQIN RELLRQQFDE WVKDSVETDV AVQSATAEQA AAANTQLSRY TQNVTESARQ GQLDPVLCRD HEIDLMIDIL SRRRKNNPIV VGEAGVGKSA LIEGLALRIV AGAVPERLRD VELLTLDLGA MQAGASVKGE FEKRFKGVMQ EVKDAPRPII LFIDEAHTLI GAGNQAGGLD VSNLLKPALA RGELRTIAAT TWSEYKKYVE KDAALSRRFQ LVKVGEPNAE EATVILRGLR GIYEKAHGVL IDEDALQAAA QLSARYISGR QLPDKAIDVL DTASARVAIN LTTPPRAVSQ LQTRLRQQEM EITQLERQAR IGLGNTEDRL VELRNAREAG AAQLVQLEAD WQQQKTQVQR VIELRTALLD EDQAVDFDAV SAAAELADCE QALEALQQSS VLVSPHVDKT QIAAVIAEWT GVPLNRISQG EMDIVTRLPE FLGETIKGQQ LAIAQLHKHL LTARADLRRP GRPLGAFLLV GPSGVGKTET VVQIADLMFG GRNYLTTINM SEYQEKHTVS RLIGSPPGYV GFGEGGVLTE AIRQKPYSVV LLDEVEKAHP DVLNLFYQAF DKGELADGEG RVIDCRNVVF FLTSNLGFQT IVNYAEQSDV LLDALYPELA AFFKPALLAR MEVIPYLPLA HATMVEIVQG KLSRLVSLLQ QRFSAEVIIE DEVPEEILRL ANRSENGARM LESVIDGALL PPVSLQLLQR LSAGEPVSRI HFRVEAGQFQ TEVEG
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