| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_1077 |
|---|
| Symbol | |
|---|
| ID | 8529451 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 1164746 |
|---|
| End bp | 1166083 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | |
|---|
| Product | type VI secretion protein, VC_A0114 family |
|---|
| Protein accession | YP_003258498 |
|---|
| Protein GI | 261820392 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.414986 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAGTC GCAATCGCAT TATCTGGCGG GAAGGTTTGT TCATTAAACC GCAGCATTTT
CAACAGCAGC AAAGACATAC CGATTACGCA TTGCATGCGC GTCTCAGCGC ACTGAGTGAT
TATTTTTATG GCTTGCAATC GCTGGAGATT AATGAGGAAT ACCTCAATTT TGGCCGCATC
GCACTGGTTA ATGCCAGCGG GGTGATGCCT GATGGCACCG TGTTCAATAT TCCGGGCGAT
GACGCCTTGC CGCTGCCGTT GGAGATCACC GACGTCGCGC TGGCAAACCA GAAAGTGTAT
CTGGCACTAC CGCTGGCGGT AAATGGCGTC AGCGAAGTGG GCCAACCGGG ACAGGGGATC
GCCAGCCGTT TGCAATCACA CCGGCATGAC GTGCGCGATC TGCATAGCGA CGGCGGCGAT
ATCGTTTCTC TGGAGGTCGG CAAGGTTAGT CTGCGGTTGA TGCTCGATCG TGACGATCGC
AGCGCCTATG CCTCGCTGGC GATTGCCAAC ATTCTGGATA AACGCCCTGA CGGCGGCTTG
ATCCTGGATC CTAATTTTAT GCCATGCAGC ATCAGCGTTA CGGCGATCCC TGCCTTAAAA
CGCTTCCTGG GGGAATCTGC CGGTCTGGTT GCCGAACGTG CGCGCAGTCT GGCACAGCGT
ATTGCCGCAC CGGGGCAACA GGGCGTGGCG GACGTAGCGG AATTCATGAT GCTGCAATTG
CTTAACCGCG CCCAGCCCAG ATTGTCGCAT CTGGCCCGCC TTGGCACGCT ACACCCCGAG
CGCCTGCACG AGGCGTTAGT CGAGCTGTGT GGTGAACTGA TGACGTTTAC CGATGAGTCG
CGCCTGCCGC CTGAATTCCC GGCCTATCGT CATGAACATC AGCAGGCCAG CTTTGAGCCG
CTGATGATGG CGCTGCGTCA AGCCCTGAGC ACCGTACTGT CACCGCGTGC CGTTTCCATC
CAACTGAAGA AACAGCCGTA TGGTGTGATG GTGGCGATGG TCGGCGATGC GGAATTGATG
GCCAGCGCCG AGTTTGTACT GGCGGTGCGT GCGCGTATGC CGCAGGAGCA TCTGCGTAAA
CAACTGCTGC AACAAACGAA GATTGCCTCC AGCGAGAAGA TCCGCGAACT GATCAGCCTA
CAACTGCCTG GCATTCCACT GCTGCCGCTG CCGGTTGCAC CGCGTCAACT GCCTTATCAC
GCGGGTTACA GCTATTTCCA ACTGGATAGG CAAAGCCCCG CCTGGCAGGT GCTGGTATCT
GGCAATACGT TGGCGTTCCA CATTGCTGGC GAGTTCCCGG AACTGGATAT GCAGCTTTGG
GCCATCCGCG GTCAGTAG
|
|---|
| Protein sequence | MSSRNRIIWR EGLFIKPQHF QQQQRHTDYA LHARLSALSD YFYGLQSLEI NEEYLNFGRI
ALVNASGVMP DGTVFNIPGD DALPLPLEIT DVALANQKVY LALPLAVNGV SEVGQPGQGI
ASRLQSHRHD VRDLHSDGGD IVSLEVGKVS LRLMLDRDDR SAYASLAIAN ILDKRPDGGL
ILDPNFMPCS ISVTAIPALK RFLGESAGLV AERARSLAQR IAAPGQQGVA DVAEFMMLQL
LNRAQPRLSH LARLGTLHPE RLHEALVELC GELMTFTDES RLPPEFPAYR HEHQQASFEP
LMMALRQALS TVLSPRAVSI QLKKQPYGVM VAMVGDAELM ASAEFVLAVR ARMPQEHLRK
QLLQQTKIAS SEKIRELISL QLPGIPLLPL PVAPRQLPYH AGYSYFQLDR QSPAWQVLVS
GNTLAFHIAG EFPELDMQLW AIRGQ
|
|---|
| |