Gene Pecwa_0850 details

Gene Information

• Locus tag: Pecwa_0850
• ID: 8529222
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: +
• Start bp: 904938
• End bp: 905585
• Gene Length: 648 bp
• Protein Length: 215 aa
• Translation table: 11
• GC content: 51%
• Product: channel protein, hemolysin III family
• Protein accession: YP_003258276
• Protein GI: 261820170

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.577764
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAAAAA ATGCCCAGAT GTCGGACTAC TCGCTGGCAG AGGAAATTGC GAACAGCATC 
AGCCATGGAA TCGGTGTAAT TTTCGGTATT GTTGGTCTGG TTTTGCTGCT GGTGCAGGCG 
GTCAACAATG ATGCCGGGAG CGTGGCGATT GCCAGCTACA GCCTTTATGG CGGCAGTATT 
ATCCTGCTAT TTTTGGCTTC GACGCTGTAC CACGCGATCC CTTCTCAGCG CATTAAACCG 
TGGTTGAAAA AGTTCGACCA CTGCGCTATC TATCTGTTGA TTGCCGGAAC TTATACGCCT 
TTTTTGCTGG TGGGGCTGGA TTCACCGCTG GCGCATGGTT TGATGGTTGT CATCTGGAGC 
ATGGCGCTGT TGGGCGTGCT CTTCAAACTG GCGTTTGCCC ACCGTTTTGA AGTGCTGTCG 
TTAATTACCT ATCTGGTCAT GGGTTGGCTG TCGCTGGTGG TGATTTATCA GATGGTGATG 
AAGCTGTCGG CGGGGAGTGT GACGCTGTTA GCGGTGGGCG GTGTAGTGTA TACGCTGGGG 
GTGATTTTCT ACGCCAGTAA GCGTATTCCC TATAACCATG CGATTTGGCA CGGATTTGTG 
TTAGGCGGCT GCGTCTGCCA CTTTCTGGCG ATTTATCTTT ATATTTAA 

 

Protein sequence

MSKNAQMSDY SLAEEIANSI SHGIGVIFGI VGLVLLLVQA VNNDAGSVAI ASYSLYGGSI 
ILLFLASTLY HAIPSQRIKP WLKKFDHCAI YLLIAGTYTP FLLVGLDSPL AHGLMVVIWS 
MALLGVLFKL AFAHRFEVLS LITYLVMGWL SLVVIYQMVM KLSAGSVTLL AVGGVVYTLG 
VIFYASKRIP YNHAIWHGFV LGGCVCHFLA IYLYI