| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_0210 |
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| Symbol | rpoB |
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| ID | 8528568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium wasabiae WPP163 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013421 |
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| Strand | + |
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| Start bp | 230846 |
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| End bp | 234874 |
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| Gene Length | 4029 bp |
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| Protein Length | 1342 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_003257672 |
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| Protein GI | 261819566 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0404668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTACT CCTATACCGA GAAAAAACGT ATTCGTAAGG ATTTTGGTAA ACGTCCACAA
GTTTTGGACA TACCTTATCT CCTTTCTATC CAACTTGACT CGTTCCAGAA GTTTATCGAG
CAAGACCCGG AAGGCCAGCA CGGTTTGGAA GCTGCATTCC GTTCAGTTTT CCCCATAAAA
AGCTATAGCG GTAATTCAGA GCTGCAATAC GTTAGCTATC GCTTAGGCGA GCCAGTATTT
GACGTTAAAG AATGTCAGAT CCGCGGTGTG ACGTTCTCTG CGCCGCTACG CGTTAAACTG
CGCCTGGTGA TCTACGAGCG CGAAGCGCCT GAAGGCACCG TTAAAGACAT CAAAGAACAA
GAAGTTTACA TGGGCGAAAT TCCGCTCATG ACTGATAACG GTACCTTCGT GATCAACGGT
ACTGAGCGCG TAATCGTGTC TCAGTTGCAC CGTAGTCCAG GTGTGTTCTT CGATAGCGAC
AAAGGTAAAA CCCACTCTTC AGGTAAGGTG CTGTATAACG CACGTATTAT TCCTTACCGT
GGTTCCTGGC TGGATTTCGA ATTTGATCCG AAGGATAACC TATTTGTCCG TATCGACCGT
CGCCGCAAAT TGCCTGCGAC TATTATCCTG CGCGCGCTGG GTTACTCTAC CGAACAGATT
CTCGATCTTT TCTTCGATAA AATTGTCTAT GAAATCAATG GCAATAAATT GCAGATGGAT
CTGGTTCCTG AGCGCCTGCG TGGTGAAACT GCATCGTTTG ATATCGAAGC GAACGGTAAA
GTTTATATCG AAAAAGGTCG CCGCATCACT GCACGTCATA TCCGTCAGCT AGAGAAAGAC
GATATTGAGC GCATTGAAGT GCCTGTTGAA TATATTGCTG GCAAAGTACT GTCCAAAGAT
TATATCGACG AGAGCACTGG TGAACTGATC GGCGCAGCCA ACATGGAGCT GTCGCTGGAT
CTGCTGGCTA AACTGAGTCA GTCTGGTCAC AAGCGTATTG AGACCCTGTT CACCAACGAT
CTTGATCATG GTGCATACAT GTCTGAAACC GTGCGCGTCG ATCCGTCAAG CGATCGTCTG
AGCGCGCTGG TTGAAATCTA TCGCATGATG CGTCCTGGTG AGCCACCAAC GCGTGAAGCA
GCAGAAACGC TGTTCGAGAA CCTGTTCTTC TCTGAAGACC GCTACGATCT GTCTGCGGTT
GGCCGTATGA AGTTCAACCG TTCTTTGTTG CGTGACGAGA TCGAAGGTTC CGGTATCCTG
AGCAAAGATG ACATCATCGA AGTGATGAAG AAGCTCATTG ATATCCGTAA CGGCAAAGGC
GAAGTGGATG ATATCGACCA CCTCGGCAAC CGTCGTATTC GTTCCGTTGG CGAAATGGCA
GAAAACCAAT TCCGCGTTGG TCTGGTGCGT GTAGAGCGTG CTGTAAAAGA GCGTCTGTCT
CTGGGCGACC TCGATACGCT GATGCCACAA GACATGATTA ACGCCAAGCC GATTTCGGCT
GCCGTGAAAG AGTTTTTCGG TTCTAGCCAA CTGTCACAGT TTATGGACCA GAACAACCCA
CTGTCTGAGA TTACGCACAA ACGTCGTATC TCTGCATTGG GCCCAGGTGG TCTGACGCGC
GAACGTGCTG GCTTTGAAGT TCGTGACGTA CACCCGACGC ACTATGGTCG TGTTTGTCCT
ATCGAAACGC CGGAAGGTCC AAACATCGGT CTGATCAACT CCCTGTCCGT TTATGCACAA
ACCAACGAAT ACGGTTTCCT TGAAACCCCA TATCGTCGCG TGCGTGAAAA CGTGGTTACG
GATGAGATCC ATTACCTGTC TGCGATTGAA GAAGGTAACT TCGTTATCGC CCAGGCAAAC
ACCAATTTGG ACGAAGAAGG CCGCTTCATC GACGAACTGG TTACCTGCCG TAACAAAGGC
GAGTCCAGCT TGTTCAGCCG CGATCAGGTT GAATACATGG ACGTTTCCAC ACAGCAGGTG
GTTTCCGTCG GTGCATCCTT GATTCCGTTC TTGGAACACG ATGACGCCAA CCGTGCCCTG
ATGGGTGCGA ACATGCAACG TCAGGCTGTT CCAACTTTGC GCGCTGATAA GCCGCTGGTT
GGTACGGGTA TGGAACGTGC TGTTGCGGTT GACTCCGGTG TAACTGCCGT AGCCAAACGT
GGTGGTACAG TACAGTACGT GGATGCATCT CGCATTGTAA TCCGTGTTAA TGACGATGAA
ATGTATCCGG GCGAAGCCGG GATCGACATC TATAACCTGA CCAAATATAC CCGTTCTAAC
CAGAACACCT GCATCAGCCA GATGCCGTGT GTGTCTTTGG GTGAGCCGGT AGAACGTGGT
GATGTTCTGG CAGATGGTCC GTCCACCGAT TTGGGTGAGC TGGCGCTGGG TCAGAACATG
CGCGTGGCAT TCATGCCATG GAATGGTTAC AACTTCGAAG ACTCCATCCT CGTTTCCGAG
CGTGTGGTTC AGGAGGATCG CTTTACGACC ATCCACATTC AGGAACTGGC CTGTGTGTCT
CGTGACACCA AGTTAGGGCC TGAGGAAATT ACTGCGGACA TCCCTAACGT GGGTGAAGCA
GCACTTTCCA AACTGGATGA GTCTGGCATC GTTTATATCG GTGCAGAAGT CACCGGCGGT
GACATTCTGG TTGGTAAGGT AACGCCGAAA GGTGAAACCC AACTGACGCC AGAGGAAAAA
CTGCTGCGTG CGATCTTCGG TGAGAAAGCG TCTGACGTTA AAGACTCTTC TCTGCGTGTA
CCAAACGGTG TTTCCGGTAC GATTATCGAC GTACAGGTCT TTACCCGCGA TGGCGTGGAA
AAAGACAAAC GTGCGTTGGA AATCGAAGAA ATGCAACTGA AGCAGGCGAA GAAAGACCTG
ACTGAAGAGT TGCAGATTCT GGAAGCGGGT CTGTTTGGAC GTATCCACGC AGTGCTGGTT
TCTGGCGGCG TAGAAGCTGA CAAACTGGAC AAACTGCCGC GCGAGCGTTG GTTGGAACTG
GGTCTGACTG ATGAAGAGAA ACAGAATCAG TTGGAACAGC TTGCAGAACA GTATGATGAG
CTGAAGCACG AGTTTGAGAA AAAACTCGAA GCGAAGCGCC GTAAAATCAC CCAAGGCGAT
GATCTGGCAC CGGGCGTGCT GAAAATCGTT AAGGTTTATC TGGCTGTTAA GCGTCAGATT
CAACCGGGTG ACAAGATGGC AGGTCGTCAC GGGAACAAAG GTGTTATCTC CAAGATCAAC
CCGATCGAAG ATATGCCTTA CGATGAGAAC GGTACGCCGG TCGATATCGT ACTGAACCCG
CTGGGCGTAC CTTCACGTAT GAACATTGGT CAGATTCTGG AAACCCACTT GGGTATGGCT
GCAAAAGGTA TCGGCGAGAA AATCAACGCC ATGCTCAAAC AGCACGAAGA AGTGACTAAG
CTGCGTGAAT TTATCCAGAG AGCCTACGAT CTGGGCGACG ATGTGCGTCA AAAAGTCGAC
CTGAGTACTT TCTCCGACGA AGAAGTTATG CGTCTGGCTG AAAACCTGAA GAAAGGTATG
CCAATTGCAA CGCCAGTATT CGACGGTGCA AAAGAGAAAG AAATCAAGGA ACTGTTGCAG
ATGGGCGGTA TCCCTACCTC CGGTCAGATT ACTCTGTACG ATGGACGTAC TGGTGAGCAA
TTTGAGCGTC AGGTTACAGT GGGCTACATG TACATGCTGA AACTGAACCA CTTGGTTGAC
GATAAGATGC ATGCCCGTTC CACCGGTTCT TATAGCCTGG TTACTCAGCA GCCGCTGGGT
GGTAAGGCGC AGTTCGGTGG TCAACGCTTC GGTGAGATGG AAGTGTGGGC GCTGGAAGCT
TATGGTGCAG CTTATACCCT GCAAGAAATG TTGACCGTTA AGTCTGATGA CGTGAACGGC
CGTACCAAGA TGTATAAGAA CATCGTGGAT GGCAATCATC AGATGGAGCC AGGCATGCCG
GAATCCTTCA ACGTATTGTT GAAAGAAATC CGCTCGCTGG GTATCAACAT CGAGCTGGAA
GAAAAGTAA
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| Protein sequence | MVYSYTEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFQKFIE QDPEGQHGLE AAFRSVFPIK
SYSGNSELQY VSYRLGEPVF DVKECQIRGV TFSAPLRVKL RLVIYEREAP EGTVKDIKEQ
EVYMGEIPLM TDNGTFVING TERVIVSQLH RSPGVFFDSD KGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDNLFVRIDR RRKLPATIIL RALGYSTEQI LDLFFDKIVY EINGNKLQMD
LVPERLRGET ASFDIEANGK VYIEKGRRIT ARHIRQLEKD DIERIEVPVE YIAGKVLSKD
YIDESTGELI GAANMELSLD LLAKLSQSGH KRIETLFTND LDHGAYMSET VRVDPSSDRL
SALVEIYRMM RPGEPPTREA AETLFENLFF SEDRYDLSAV GRMKFNRSLL RDEIEGSGIL
SKDDIIEVMK KLIDIRNGKG EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVKERLS
LGDLDTLMPQ DMINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEITHKRRI SALGPGGLTR
ERAGFEVRDV HPTHYGRVCP IETPEGPNIG LINSLSVYAQ TNEYGFLETP YRRVRENVVT
DEIHYLSAIE EGNFVIAQAN TNLDEEGRFI DELVTCRNKG ESSLFSRDQV EYMDVSTQQV
VSVGASLIPF LEHDDANRAL MGANMQRQAV PTLRADKPLV GTGMERAVAV DSGVTAVAKR
GGTVQYVDAS RIVIRVNDDE MYPGEAGIDI YNLTKYTRSN QNTCISQMPC VSLGEPVERG
DVLADGPSTD LGELALGQNM RVAFMPWNGY NFEDSILVSE RVVQEDRFTT IHIQELACVS
RDTKLGPEEI TADIPNVGEA ALSKLDESGI VYIGAEVTGG DILVGKVTPK GETQLTPEEK
LLRAIFGEKA SDVKDSSLRV PNGVSGTIID VQVFTRDGVE KDKRALEIEE MQLKQAKKDL
TEELQILEAG LFGRIHAVLV SGGVEADKLD KLPRERWLEL GLTDEEKQNQ LEQLAEQYDE
LKHEFEKKLE AKRRKITQGD DLAPGVLKIV KVYLAVKRQI QPGDKMAGRH GNKGVISKIN
PIEDMPYDEN GTPVDIVLNP LGVPSRMNIG QILETHLGMA AKGIGEKINA MLKQHEEVTK
LREFIQRAYD LGDDVRQKVD LSTFSDEEVM RLAENLKKGM PIATPVFDGA KEKEIKELLQ
MGGIPTSGQI TLYDGRTGEQ FERQVTVGYM YMLKLNHLVD DKMHARSTGS YSLVTQQPLG
GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVNG RTKMYKNIVD GNHQMEPGMP
ESFNVLLKEI RSLGINIELE EK
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