| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4979 |
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| Symbol | |
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| ID | 4583540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008688 |
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| Strand | - |
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| Start bp | 489237 |
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| End bp | 491096 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639772282 |
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| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_918735 |
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| Protein GI | 119387701 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.178803 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGGGA TGCCGGATAC GGGGACGCAT GTCCTTGAAG TCATTCGCGT GGCCGAGGGC
GAGACCTCGC CGCGCCGGGA TGCCGATGTC CTGGCCTCGT GGCGGCGCTG CGTCAACGAA
CACCAGCTCG ACCCCAGCCG CCATGCCGGG CCGCGCATCG TCACCCAGAA GGAACTGCGC
CAGCATCGCC AGGAATCCGA GGAGCTGCTG GGCGTGGCCC GGCACGGCAT GGAGGACCTG
TATCGCCGTG TGAACGCGAT GGGCTATGTG CTGCTGCTCG CGAATGCGCG CGGCGTGACC
GTCGATGCCA TCGGCGATGC GGAGCTGGAC CGCGAGCTGC GCCATGCCGG ACTGATCGCC
GGTTCGGAAT GGCATGAACG CCATGTCGGC ACCAACGGCG TCGGCGCCTG CCTCGCCACC
GGGCGGGCGA TCACCGTGCA TCGCACCGAC CATTTCGACG TGGCGCTGAC GCCGCTGTCC
TGCACCGCAG TGCCGGTCCA TGACACGCGC GGCGGGCTGA TCGGCGTGCT GGACCTGTCG
CATCTGCAGG CGCCGCAGGA CAAGATGAGC CAGGCGCTGA CGCTGGAGGT GATGAAATCC
TGCGTCCGGC GCATCGAGAT GGCCAATCTG GTGCGCCGGC ATCGCGCCGA CTGGATCTTG
CGGCTGAACC CCTCGCCCGA GTTCCTTGAC GTGGACCCGA TGGCCGCGGT CGCCATCGAC
CCCGAGGGCC GCATCAGCGG CATGACCAAC AATGCGCGCG AGCTTTTGGC TGGCGGGCCG
GCCCAGGCGC TGATCGGGCG GCGCTTCGAC GATATCTTCG CCTATGACAT GGACGACCTG
CCCAAGCTGT CGCGCGCCAT GGCGCCGGTC GACGGCGCGC TGGAGATGCA GGCCGGCGGG
CTGATCTTTG CCCGTGCCGT GCCGCCGACC GCGCCGCCGC GCCGGGCTGC GGAAGGCAGC
CTGCCCCAGC CGCTGCGCGC GATCCATGGC GGCGATCCGG CCATGGAATG CCTGGCCGAG
CGCGCCGCCA AGGTGGTGGA CCGCCAGATC AGCGTCATCC TGCGCGGCGA GACGGGGACC
GGCAAGGAGT TCATCGCCCG CGCCATGCAC GAGTCCTCGC GCAGGCGGGG GGCCTTCGTC
GCGATCAACT GCGCCGCGCT GCCCGAGGCT CTGATCGAAA GCGAGCTGTT CGGCTATACC
CCGAACGCCT TTACCGGCGC CCACGCGCGC GGCAAGAAGG GCCTGATCCG CGAGGCGCAT
GGCGGCACGC TGTTCCTTGA CGAGATCGGA GACATGCCGC TGGCCTTGCA GGCGCGGCTG
CTGCGCGTGC TGTCGGAACG CGAGTTGCTG CCGGTCGGTG CCACGCGCGC CGAGCCGGTG
GATATCCGCG TCATCTCGGC CTCGCATCAT GACCTGGCCC AGCTGGTGGC CGAGGGGCGG
TTCCGGCAGG ATCTCTATTA CCGGCTGAAC GGGCTGGTGC TGGACATCCC GCCGGTCCGG
GCGCGGGCCG ACCTGGAATG GCTGATCGCC CGCATCGCCG GCGCGACCGA GGGCAAGCCG
CGATTTTCCC CGCAGGCCAT GGCCCTGCTG CTGGCCCATG ACTGGCCCGG CAACGTCCGC
GAGATCGTCA ATCTTTGCGA GCTTGCCGCG GCGATGTGCG ACGGTGCCCC GGTCCTGCCC
GCGCATCTGC CGGCAGGGAT GGCGGATCGA GCCGCCCTGT CCCGGTCGCC GGCAGGCAGC
AGGCCCGAGG ACGAATTGCT GCGGCTCCTG GACGAACATG GGGGCAATGT CTCGGCTGCA
GCCCGTGCCG CGAAGATCGA CCGCTCGACA TTCTACCGGC GCTTGCGCAA GTCGAAATAG
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| Protein sequence | MRGMPDTGTH VLEVIRVAEG ETSPRRDADV LASWRRCVNE HQLDPSRHAG PRIVTQKELR
QHRQESEELL GVARHGMEDL YRRVNAMGYV LLLANARGVT VDAIGDAELD RELRHAGLIA
GSEWHERHVG TNGVGACLAT GRAITVHRTD HFDVALTPLS CTAVPVHDTR GGLIGVLDLS
HLQAPQDKMS QALTLEVMKS CVRRIEMANL VRRHRADWIL RLNPSPEFLD VDPMAAVAID
PEGRISGMTN NARELLAGGP AQALIGRRFD DIFAYDMDDL PKLSRAMAPV DGALEMQAGG
LIFARAVPPT APPRRAAEGS LPQPLRAIHG GDPAMECLAE RAAKVVDRQI SVILRGETGT
GKEFIARAMH ESSRRRGAFV AINCAALPEA LIESELFGYT PNAFTGAHAR GKKGLIREAH
GGTLFLDEIG DMPLALQARL LRVLSERELL PVGATRAEPV DIRVISASHH DLAQLVAEGR
FRQDLYYRLN GLVLDIPPVR ARADLEWLIA RIAGATEGKP RFSPQAMALL LAHDWPGNVR
EIVNLCELAA AMCDGAPVLP AHLPAGMADR AALSRSPAGS RPEDELLRLL DEHGGNVSAA
ARAAKIDRST FYRRLRKSK
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