| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4816 |
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| Symbol | |
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| ID | 4583378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008688 |
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| Strand | + |
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| Start bp | 312233 |
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| End bp | 314110 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639772120 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_918573 |
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| Protein GI | 119387539 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.290966 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.395519 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATTGA CCGACACCCA GCCCGAGGGC GAGCTGGCCC TTGGCGGTAT CGAGGCGCTG
GCCGAGCCCA AGCGCGCCGA GCGATGGATG CGTCCGGTCG AAATCCTGGC CGCCGGCCTT
CTGGTGGTGA TGATCGTCAC CGTGCTGGCC AATGTGTTCT TCCGCTATGT GTTGGCCAAG
CCGCTGATCT GGGGCGACGA AGTGGCCTCG ATCAGCTTCA TCTGGATGGC GATGCTGGGC
GCGGCGCTGG CGGTGGACCG GCACGAGCAT ATGCGCCTGA CCGTGTTCCT GCCGCTGCTG
CCCGAGCGGC TGGCGCGGGT GGCCGAGGTG GCGGGCCAGG TGCTGGTCTG CGTCCTGCTG
CTGCGGCTTT TGCCGGTCGC GGTGGAATAC GCCTATGAGG AAAGCTTCGT CAGGTCGCCC
GCGCTGGGGC TGCCGATGTC GTACCGCGCC TCGGCTCTGC CCGCCGGGAT CGGGCTGATG
TCGGTGCTGG CGGTGCTTTC GGTCCTGCGC TCGCGCGAAT GGCGCATCAT CGCCGCGACG
CTGGCGGTGA CGGCCGCGGC GGTGGCGCTG TTGTGGTTCG CGCGGCCGGC GCTCTTGTCC
ATCGGCAACT GGAACCTGCC GATCTGGCTG GGCCTGCTGG TGGCGGTGCT TCTGTGCATC
GGCGTCCCCA TCGCCTTCTG CTTTGCGCTG GGGACGCTGG CCTATCTGAC CTTCGCCAGC
CATGCGCCGA TCTTCGTGAT GATGGGCCGC ATCGACGAGG GCATGTCCTC GCTGATCCTG
CTGTCGGTGC CGGTCTTCGT GCTTCTGGGC TGCATCCTCG ACGCCACCGG CATGGGCAAG
GCCATCGTCA ATTTCCTCGC CTCGCTTCTG GGCCATGTAA AGGCGGGGAT GAGCTATGTG
CTCCTGGGCT CGATGTTCCT GGTTTCGGGG ATTTCCGGCT CCAAGGTCTC GGACATGGCG
ACGGTGGCCC CGGCGCTGTT CCCCGAGATG CGCAGGCGCG GCCATTCCGC GCCCGAGATG
ACGGCGCTGC TGGCCACCGG CGCGGCGATG GCTGATACGG TGCCGCCCTC GATCGTGCTG
ATCGTGCTGG GCTCGGTCGC GGGCGTATCC ATTGCCGGGC TGTTCACCTC GGGCTTCGTC
ATCGCCATGG TGCTGCTGGT CGTGCTGGCG GTGCTGGCGC GCTGGAAGGC GCGGGGCGAG
GACATGTCGG GCGTCAGCCG CGCCACCTTG CCGCTGATCG GCAGGATGGC GGTGATCGCC
GCGCCGGCGC TGGTGCTGCC CTTCATGATC CGCAGCCTGG TCGGCGGCGG CGTGGCGACC
GCGACCGAGG TCTCGACCAT CGCCGTGGTC TATGCCTTCG CGATCGGCGT CGTGCTTTAC
GGCGGCATCC CGATCCGCAG ACTGGGCACC ATGCTGGTCG AAACCGCCGC CATGTCGGGC
GCGATCCTGC TGATCCTGGG CGCCGCATCC GCGATGGCCT GGGCGCTGAC GCAATCGGGC
TTCGCCCGCG ACCTGATGGC CGTCGTCACC GGTCTGCCGG GCGGCTGGGT GGTGTTCATG
CTGGCCTCCA TCCTGATCTT CCTGATCCTG GGCTGCGTGC TCGAGGGGCT GCCGGCCATC
GTCCTGCTGG CGCCGATCAT GTTCCCCATC GCGCGCGGCC TGGGCATCCA CGACATCCAT
TATGCCATGG TCATCGTCAC GGCGATGAAC ATCGGGGTGA TGGCGCCGCC CATCGGCATC
GGCTTCTACA TCGCCTGCAA GATCGCCAAT GTGCCCGCCG ACCAGGTGAT GCGCCGGATC
TGGCCCTATC TGGCGGCGCT GGTGATCGGC CTGCTGGTCA TCGCCGCCGT GCCCTGGTTC
TCGACCGCCT TGCTTTGA
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| Protein sequence | MQLTDTQPEG ELALGGIEAL AEPKRAERWM RPVEILAAGL LVVMIVTVLA NVFFRYVLAK
PLIWGDEVAS ISFIWMAMLG AALAVDRHEH MRLTVFLPLL PERLARVAEV AGQVLVCVLL
LRLLPVAVEY AYEESFVRSP ALGLPMSYRA SALPAGIGLM SVLAVLSVLR SREWRIIAAT
LAVTAAAVAL LWFARPALLS IGNWNLPIWL GLLVAVLLCI GVPIAFCFAL GTLAYLTFAS
HAPIFVMMGR IDEGMSSLIL LSVPVFVLLG CILDATGMGK AIVNFLASLL GHVKAGMSYV
LLGSMFLVSG ISGSKVSDMA TVAPALFPEM RRRGHSAPEM TALLATGAAM ADTVPPSIVL
IVLGSVAGVS IAGLFTSGFV IAMVLLVVLA VLARWKARGE DMSGVSRATL PLIGRMAVIA
APALVLPFMI RSLVGGGVAT ATEVSTIAVV YAFAIGVVLY GGIPIRRLGT MLVETAAMSG
AILLILGAAS AMAWALTQSG FARDLMAVVT GLPGGWVVFM LASILIFLIL GCVLEGLPAI
VLLAPIMFPI ARGLGIHDIH YAMVIVTAMN IGVMAPPIGI GFYIACKIAN VPADQVMRRI
WPYLAALVIG LLVIAAVPWF STALL
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