| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4800 |
|---|
| Symbol | |
|---|
| ID | 4583362 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008688 |
|---|
| Strand | + |
|---|
| Start bp | 295952 |
|---|
| End bp | 296416 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639772104 |
|---|
| Product | phenylacetic acid degradation protein PaaD |
|---|
| Protein accession | YP_918557 |
|---|
| Protein GI | 119387523 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1
[TIGR02286] phenylacetic acid degradation protein PaaD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.283675 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.204675 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACG CATCCATGAA ACCCGTTTCC CAGATGACCC CGCAGGAACT GGCCGAAGCT
TCGGCCAAGG CGATGTGGAA CGACGATTCC GCCAGCCAGC GGCTGGGCAT GAGCCTGGAC
CATATCGCCC CTGGCGAGGC GACGCTTTCC ATGACCATCA CCGATGCCAT GTCGAACGGG
CACGGCAATT GCCATGGCGG CTATATCTTC ACGCTCGCCG ACAGCGCCTT TGCCTTTGCC
TGCAACAGCT ACAACCAGTT GGTGGTCGCG CAGCATTGCT CGGTCACCTA TCTGCTGCCG
GGCCGCATCG GCGACCGGCT GACGGCAGAG GCCCGCGAGG TCTCGCGCCG CGGCCGCTCG
GGCATCTACG ACATCCGCAT CACCAACCAG GACGGCCAGC ACGTGGCCGA GTTCCGCGGC
CATTCCCGCA CCGTCAAAGG CACCCATCTG CCGGTCGAAT CCTGA
|
|---|
| Protein sequence | MKDASMKPVS QMTPQELAEA SAKAMWNDDS ASQRLGMSLD HIAPGEATLS MTITDAMSNG
HGNCHGGYIF TLADSAFAFA CNSYNQLVVA QHCSVTYLLP GRIGDRLTAE AREVSRRGRS
GIYDIRITNQ DGQHVAEFRG HSRTVKGTHL PVES
|
|---|
| |