| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4236 |
|---|
| Symbol | |
|---|
| ID | 4582786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | - |
|---|
| Start bp | 1397272 |
|---|
| End bp | 1401036 |
|---|
| Gene Length | 3765 bp |
|---|
| Protein Length | 1254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639771543 |
|---|
| Product | nitrate reductase, alpha subunit |
|---|
| Protein accession | YP_917996 |
|---|
| Protein GI | 119386941 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG5013] Nitrate reductase alpha subunit |
|---|
| TIGRFAM ID | [TIGR01580] respiratory nitrate reductase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.340769 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.474216 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCATC TGCTGGACCG CCTGAACTTC CTGAAACCCA CGCGCAAGGA CGTGTTTTCG
GAAGGGCATG GCCAGACCAC GACCGAGAAC CGCGACTGGG AGGACACCTA TCGCTCGCGC
TGGCGGCACG ACAAGATCGT GCGCTCGACC CATGGGGTGA ACTGCACGGG CTCATGCTCG
TGGAAGATCT ATGTCAAGTC CGGCATCGTC ACCTGGGAAA CGCAGCAGAC CGACTATCCC
CGCACAAGGC CGGACCTGCC CAACCACGAG CCGCGCGGCT GCGCGCGCGG CGCCTCATAC
AGCTGGTATC TTTACTCCGC GAACCGGGTA AAGACGCCGC TGATCCGCGG CCGGCTGATG
AAGCTGTGGC GCGAAAAGCG CAAGACCATG ACGCCCATCC AGGCATGGAC CGCGATCCAG
AACGACCCGC AGGCCCGCGA AAGCTATACC CGCATCCGCG GCAAGGGCGG CTTCGTGCGC
GCGACCTGGG ACGAGGCGAC CGAGATCACC GCCGCCGCCA ACGCCTATAC CGCCCGGACA
TACGGCCCCG ACCGGGTCTT CGGCTTTTCG CCGATCCCGG CCATGTCGAT GATCTCCTAT
GCGGCGGGCA CGCGCTACCT GTCGCTTCTG GGCGGCACCT GCATGTCCTT TTACGACTGG
TATTGCGACC TGCCGCCGGC CAGCCCGCAG ACCTGGGGCG AACAGACCGA CGTGCCGGAA
TCGGCGGACT GGTATAATGC GGGCTACCTG CTGCTCTGGG GCTCGAACGT GCCGCAGACC
CGCACGCCCG ACGCGCATTT CTATACCGAG GCGCGCTATC GCGGCACCAA GTCGGCGGTG
ATCTGCCCCG ACTATTCCGA GGCGGCGAAG TTCGGCGACA TCTGGCTGAA CGCCAAGCAG
GGCACCGATG CGGCGCTTGG CATGGCCTTT GGCCATGTCA TCCTGCGCGA ATTCCACCTG
GACCGGCAGG CCGAGTATTT CGAGGATTAC TGCCGGCGCT ATTCCGACAT GCCGATGCTG
GTGCGGCTGG ACGAGCGTGA CGGCCGCCTG ATCCCCGGCC GCCAGCTGCG CGCCAGCGAT
TTCGACGGCG CGCTGGGACA GTCGAACAAC CCGGAATGGA AGACGGTGGC CATCGACGAG
GCCACGGATC GCATCGTGGT CCCGAACGGC TCGGTCGGTT TCCGCTGGGG CGAAGAGGGG
CGCTGGAACC TGGAGCAGAA GGCCGGCGAG GACGAGGTCC GGCTGAAGAT GAGCCTGATC
CTGGACGAGG ACCGCGACGA CGTGCTTGGC GTCGACTTCC CCTATTTCGG CGGAGCCGCG
ACCAACGGCT TCGCGGTGGA CGACCGCGGC GGGGTGCTGA CTCGCAACGT GCCGGTCAAG
CGCCTGACCC TGGCCAATGG CGAGGAGGCG CTGGTCGCCA CGGTCTTCGA CCTGTTCTGC
GCCAATTACA GCCTGGACCG GGGCCTGGGC GGCGAGAACG TTGCCCGCGA CTACGACGCC
GACGTGCCGT TCACCCCCGC CTGGGCCGAG CGCATCACCG GCGTGCGTCG CGACAAGATC
ATCCAGGTCG CCCGCGAATT CGCCGCCAAT GCCGAAAAGA CCAACGGGCG GTCGATGATC
ATCATCGGCG CGGCGATGAA CCACTGGTTC CACATGGACA TGAACTATCG CGCCGTCATC
AACATGCTGG TGATGTGCGG CTGCGTCGGC CAGTCGGGCG GCGGCTGGGC GCATTACGTC
GGCCAGGAAA AGCTGCGCCC GCAGACCGGC TGGACGGCGC TGGCCTTTGC GCTGGACTGG
GCACGGCCGC CGCGGCACAT GAACTCGACC TCGGCCTGGT ATGCCCATAC CGACCAGTGG
CGCTATGAGA CGGTGAGCAC GCAGGAAATC CTGTCGCCCA CAGCGCCGGC GGGCGATTGG
AGCCGGCTCA GCCTGATCGA CTACAACATC CGGGCCGAGC GCATGGGCTG GCTGCCCTCG
GCCCCGCAAC TGCGTACCAA CCCGCTGGAG GTCGGCCATG CGGCAAAGGC CGAAGGCATC
CCCGCCAGGG ACTATGTTGC GCGCGAGCTG AAATCCGGCG CGTTGCAGAT GTCCTGCGAG
GACCCGGATG CGCCTGAGAA CTGGCCGCGC AACCTGTTCG TCTGGCGCTC GAACCTGCTG
GGTTCCTCGG GCAAGGGGCA TGAATATTTC CTCAAGCACC TGCTCGGCAC CGATCACGGC
GTGCAGGGCA AGGATCTGGG CGAGGAGGGG CGCCAGAAGC CGGTCGAGGC GGTCTGGCAC
GACCAGGCGC CGCAAGGCAA GCTGGACCTG CTGGTCACCA TCGACTTCCG CATGTCCACC
ACCGCCGTCT ATGCCGACAT CGTCCTGCCG ACCGCCAGCT GGTATGAAAA GGACGACATG
AACACCTCGG ACATGCATCC GTTCATCCAC CCGCTGCAAG CGGCGGTGGA CCCGGCATAC
GAGTCCAGGA GCGACTGGGA GATCTTCAAG TCCATCGCCC GCAAGTTCTC GGAAATCGCG
CCCGAAGTGC TGGGGGTCGA GACCGACGTG GTCCAGCTTC CCCTGCAGCA CGACAGCGCC
GGCGAGATCG CCCAGCCCTT CGTGCAGGAC TGGAAGCAGG GCGAATGCGA GTTGATCCCC
GGCAAGACCG CGCCCGCCTA TATCGAGATC GAGCGAGACT ATCCGAACCT CTACAAACGC
TTCACCGCGC TGGGCCCGTT GATGGAAAAG CTGGGCAATG GCGGCAAGGG CATCTCCTGG
GACACCAGGG ACGAGGTGCA TCACCTGCAG GCGCTGAACG GCCGCGTGAC CGAAGAGGGC
GCGACCAAGG GCATGGCGCG GATCGAGACG GCGATCGACG CCGCCGAAGT GGTGCTGATG
CTGGCGCCCG AAACCAATGG CGAGGTGGCG GTCAAGGCAT GGGACGCGCT GTCCCGCGCC
ACGGGACGCG AGCACAGGCA CCTGGCCGAG GTCAAGGAGG ATGAGAAGAT CCGCTTCCGC
GACATCGCCG CCCAGCCACG GAAGATCATC TCGTCCCCCA CCTGGTCGGG CATCGAAAGC
GAGGAGGTCT GCTACAACGC CGGCTGGACC AACGTGCATG AGCTGATCCC GTGGCGCACC
GTCTCGGGCC GCCAGCAGCT TTACCAGGAC CACGAATGGA TGCGCGCCTT TGGCGAGGGC
TTCGTGACCT GGCGCCCGCC GGTCGACCTC AAGACCGTGG GTGCGGATGC GAGGAAATCG
CTGGCCGCGG GCGAAAAGCA CGTGGTGCTG AACTTCCTGA CCCCGCACCA GAAATGGGGC
ATCCACTCGA CCTATACCGA CAACCTCTTG ATGCTGACGC TGAACCGCGG CGGCCCGGTG
GTGTGGATCT CGGAAATCGA CGCCAGGAAA GCCGGGCTGG TCGACAACGA CTGGGTCGAG
GTCTTCAACA GCAATGGCGT CATCACTGCC CGCGCGGTGG TCAGCCAGCG CATGAAGGAA
GGCAGCATGT TCATGTATCA CGCCCAGGAA AAGATCGTGA ACACGCCCGG CAGCCAGATC
ACCAACCTGC GCGGCGGCAT CCACAACTCG GTGACGCGCA TCGTGCCCAA GCCCACCCAC
ATGATCGGCG GCTATGCCCA GTTGGCCTAT GGCTTCAACT ATTACGGCAC CGTGGGCGCG
AACCGGGACG AATTCGTCAT CGTCCGCAAG ATGAACAAGG TCGACTGGCT TGACCGACCC
CTGGAAACGG GCCCCGCAAC CCAAGGTATG GAGGCAGCGG AATGA
|
|---|
| Protein sequence | MSHLLDRLNF LKPTRKDVFS EGHGQTTTEN RDWEDTYRSR WRHDKIVRST HGVNCTGSCS
WKIYVKSGIV TWETQQTDYP RTRPDLPNHE PRGCARGASY SWYLYSANRV KTPLIRGRLM
KLWREKRKTM TPIQAWTAIQ NDPQARESYT RIRGKGGFVR ATWDEATEIT AAANAYTART
YGPDRVFGFS PIPAMSMISY AAGTRYLSLL GGTCMSFYDW YCDLPPASPQ TWGEQTDVPE
SADWYNAGYL LLWGSNVPQT RTPDAHFYTE ARYRGTKSAV ICPDYSEAAK FGDIWLNAKQ
GTDAALGMAF GHVILREFHL DRQAEYFEDY CRRYSDMPML VRLDERDGRL IPGRQLRASD
FDGALGQSNN PEWKTVAIDE ATDRIVVPNG SVGFRWGEEG RWNLEQKAGE DEVRLKMSLI
LDEDRDDVLG VDFPYFGGAA TNGFAVDDRG GVLTRNVPVK RLTLANGEEA LVATVFDLFC
ANYSLDRGLG GENVARDYDA DVPFTPAWAE RITGVRRDKI IQVAREFAAN AEKTNGRSMI
IIGAAMNHWF HMDMNYRAVI NMLVMCGCVG QSGGGWAHYV GQEKLRPQTG WTALAFALDW
ARPPRHMNST SAWYAHTDQW RYETVSTQEI LSPTAPAGDW SRLSLIDYNI RAERMGWLPS
APQLRTNPLE VGHAAKAEGI PARDYVAREL KSGALQMSCE DPDAPENWPR NLFVWRSNLL
GSSGKGHEYF LKHLLGTDHG VQGKDLGEEG RQKPVEAVWH DQAPQGKLDL LVTIDFRMST
TAVYADIVLP TASWYEKDDM NTSDMHPFIH PLQAAVDPAY ESRSDWEIFK SIARKFSEIA
PEVLGVETDV VQLPLQHDSA GEIAQPFVQD WKQGECELIP GKTAPAYIEI ERDYPNLYKR
FTALGPLMEK LGNGGKGISW DTRDEVHHLQ ALNGRVTEEG ATKGMARIET AIDAAEVVLM
LAPETNGEVA VKAWDALSRA TGREHRHLAE VKEDEKIRFR DIAAQPRKII SSPTWSGIES
EEVCYNAGWT NVHELIPWRT VSGRQQLYQD HEWMRAFGEG FVTWRPPVDL KTVGADARKS
LAAGEKHVVL NFLTPHQKWG IHSTYTDNLL MLTLNRGGPV VWISEIDARK AGLVDNDWVE
VFNSNGVITA RAVVSQRMKE GSMFMYHAQE KIVNTPGSQI TNLRGGIHNS VTRIVPKPTH
MIGGYAQLAY GFNYYGTVGA NRDEFVIVRK MNKVDWLDRP LETGPATQGM EAAE
|
|---|
| |