Gene Pden_4107 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4107 
Symbol 
ID4582658 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1260347 
End bp1261075 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content69% 
IMG OID639771416 
ProductABC transporter related 
Protein accessionYP_917869 
Protein GI119386814 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCTGC ATCGCGCCAT CAGCCCGGCC GTTGCCGTCC GCCGCCTGTC GCGCGCCTTC 
GGGGACAGGC CCGTGCTGCA CGACATCACG TTGAACATCC CCAGCGGCCA GTTCGTGGCG
CTGCTGGGCG AATCCGGCTC GGGCAAGACC ACGCTGCTCC GGGCGCTTGC GGGGCTGGAT
GACGATGCCC GGCAGTCGGG CAGCTACAGC GTGCCCAAGA ACGTCTCGGT CCTGTTTCAG
GACGCGCGCC TGTTGCCGTG GCTCAGCGTC ATCGACAACC TGACGCTTGG CCTCAGGCGA
CAGGATGCGG TGCAGGCCGC GCAGTCCATG CTGGACAGCG TCGGCATCGG CGACAAGGCG
CGGGCCTATC CGGCCACGCT GTCCGGGGGG CAGAAACAGC GCGCGGCCCT TGCTCGCTCG
CTTCTGCGCA ACCCCGATCT GCTGCTGGCG GATGAACCCT TCGGGGCGCT GGATGCGCTG
ACACGGCTGA AGATGCACGA CCTGCTGCTG CGGCTGGTCG AACGCAGCCG CCCGACCATC
GTCCTCGTGA CCCATGACGT GGACGAGGCG GTGCTGCTGG CCGACCGCAT CCTGGTGCTG
CGCGACGGCG TCATCGCCGA GGATCACCGC GTGACCGTGC CGCATCCGCG GCGCCCCAGC
CATCCCGATT TCGAGGATCT GCGCCGCCGG CTGCTGCGCA GCCTGGGGGT CGAAACCGAA
CATATCTGA
 
Protein sequence
MTLHRAISPA VAVRRLSRAF GDRPVLHDIT LNIPSGQFVA LLGESGSGKT TLLRALAGLD 
DDARQSGSYS VPKNVSVLFQ DARLLPWLSV IDNLTLGLRR QDAVQAAQSM LDSVGIGDKA
RAYPATLSGG QKQRAALARS LLRNPDLLLA DEPFGALDAL TRLKMHDLLL RLVERSRPTI
VLVTHDVDEA VLLADRILVL RDGVIAEDHR VTVPHPRRPS HPDFEDLRRR LLRSLGVETE
HI