Gene Pden_3971 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3971 
Symbol 
ID4582522 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1109057 
End bp1111228 
Gene Length2172 bp 
Protein Length723 aa 
Translation table11 
GC content67% 
IMG OID639771280 
Productphosphoribosylformylglycinamidine synthase II 
Protein accessionYP_917733 
Protein GI119386678 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0046] Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 
TIGRFAM ID[TIGR01736] phosphoribosylformylglycinamidine synthase II 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGAAC CGCAGATCAC CGAGGAACTG ATCGCCGCGC ACGGGCTCAA GCCCGACGAA 
TACCAGCGCA TCCTCGAGAT CATCGGGCGC GAGCCGAGCT TTACCGAACT CGGCATCTTT
TCGGCCATGT GGAACGAGCA CTGCTCCTAC AAGTCGTCCA AGAAATGGCT GCGCACCCTG
CCGACCACGG GCCCGCAGGT GATCTGCGGC CCGGGCGAGA ATGCGGGCGT CGTCGACATC
GGCGACGGCC AGGCCGTGGT CTTCAAGATG GAAAGCCACA ACCACCCCAG CTATATCGAG
CCGCACCAGG GCGCCGCGAC CGGCGTCGGC GGCATCCTGC GCGATGTCTT TACCATGGGC
GCCCGCCCCA TCGCCGCCAT GGATGCGCTG TCCTTCGGCC GGCCCGAGCA TCCCAAGACC
GCGCATCTGG TCAAGGGCGT GGTCGAGGGG ATCGGCGCCT ATGGCAATGC CTTCGGCGTG
CCGAACGTGG GCGGCGAGGT GCGCTTTCAT CGCAGCTATG ACGGCAACTG CCTGGTGAAC
GCCTTTGCGG CGGGTCTCGC GGACAGCGAC AAGATCTTCT ATTCCGCCGC CTCGGGCGTC
GGCATGCCGG TGGTCTATCT GGGCGCCAAG ACCGGCCGCG ACGGTGTCGG CGGCGCCACC
ATGGCCTCGG CCGAGTTCGA CGACACCATC GAGGAAAAGC GCCCCACCGT GCAGGTCGGC
GACCCTTTTA CCGAGAAATG CCTGTTGGAA GCCTGCCTGG AACTGATGCA GACGGATTCC
GTCATCTCGA TCCAGGACAT GGGTGCGGCC GGCCTGACCT GCTCGGCGGT CGAGATGGGC
GACAAGGGTG GCTTGGGCAT CAAGCTGGTG CTGGACGCCG TGCCGCAGCG CGAAACCAAC
ATGACCGCCT ATGAGATGAT GCTTTCCGAG TCGCAGGAAC GCATGCTCAT GGTGCTGAAG
CCCGAAAAAG AGGCCGAGGC GCGGGCGATC TTCGAGAAAT GGGATCTGGA CTTCGCCATC
GTCGGCGAGA CCATCGCCGA GGACCGTTTC CTGATCGTCC ACGGCAACGA GGTCAAGGCC
GACCTGCCGC TGTCCAAGCT CAGCTCCAGC GCGCCGGAAT ACGACCGCCC GTGGACCCCG
ACGCCGGCCG CGGCCGAGAT GCCCGCCCTG CCCGCCATCG CCCCCATCGC GGCGCTGAAA
TCGCTGATCG GCAGCCCGAA CCATGCCCAT AAGGGCTGGG TCTGGGAGCA ATACGACACC
CAGGTCGGCG CCGACACCGT CCGCCGCCCC GGCCTTGGTG CCGGCGTGGT GCGCGTGCAT
GGCACCCAAA AGGCACTGGC CTTCACCAGC GACGTGACCC CCCGCTATGT CAAGGCGAAC
CCCTATGAGG GCGGCAAGCA GGCGGTGGCC GAGGCCTATC GCAACCTGAC CGCCTGCGGC
GCCCTGCCGC TGGCCACCAC GGACAACCTG AACTTCGGCA ACCCGGAAAA GCCCGAGATC
ATGGGCCAGC TGGTCGGCGC CATCAAGGGC ATCGGCGAGG CTTGCGCGGC GCTGGATTTC
CCCATCGTCT CGGGCAACGT CTCGCTTTAC AACGAGACCG ACGGCAAAGG CATCCTGCCC
ACCCCCACCA TCGGCGGCGT CGGGCTGATC GCCGATCTGG ACGATCTGAT CGCGGGCCTG
CCGGCCGAGG GCGATCTTGC GCTGGTCATC GGCGAAACCC GCGGCCATCT GGGCCAGTCG
GCGCTGGTCG CCGAGGCTTT CGGCATCGAG GCGGGCGATG CGCCGCATGT CGACTTGACC
GCCGAGCGTC GCAACGGCGA GTTCCTGCGC GCGCATGGCA AGCTGGTCTC AGTCGCAACC
GACCTGTCGG ATGGCGGGCT GGCGCTTGCC GCCTTCGAAC TGGCCGAGGC GGCGGGACTG
GGCGTCACGC TGGACAGCGC CGAGATCGCC CAGCTTTTCG GCGAGGACCA GGCGCGCTAT
CTGGTGGCCT GCTCCGAGGA GAATGCCGCG CAACTGGTCG AGGCGGCCCA GGCGGCGGGC
GTGCCGCTGG CGCGCGTGGG CCGGTTTGGC GGCGAAGCGG TGGCGTTTGG CGGCGATGCC
GCACCGCTGG CCGAATTGTC GCAGCTTTAT CGCAGCGCCT TCGAGAAAAG CCTGAATCTG
GAACTGGCCT GA
 
Protein sequence
MNEPQITEEL IAAHGLKPDE YQRILEIIGR EPSFTELGIF SAMWNEHCSY KSSKKWLRTL 
PTTGPQVICG PGENAGVVDI GDGQAVVFKM ESHNHPSYIE PHQGAATGVG GILRDVFTMG
ARPIAAMDAL SFGRPEHPKT AHLVKGVVEG IGAYGNAFGV PNVGGEVRFH RSYDGNCLVN
AFAAGLADSD KIFYSAASGV GMPVVYLGAK TGRDGVGGAT MASAEFDDTI EEKRPTVQVG
DPFTEKCLLE ACLELMQTDS VISIQDMGAA GLTCSAVEMG DKGGLGIKLV LDAVPQRETN
MTAYEMMLSE SQERMLMVLK PEKEAEARAI FEKWDLDFAI VGETIAEDRF LIVHGNEVKA
DLPLSKLSSS APEYDRPWTP TPAAAEMPAL PAIAPIAALK SLIGSPNHAH KGWVWEQYDT
QVGADTVRRP GLGAGVVRVH GTQKALAFTS DVTPRYVKAN PYEGGKQAVA EAYRNLTACG
ALPLATTDNL NFGNPEKPEI MGQLVGAIKG IGEACAALDF PIVSGNVSLY NETDGKGILP
TPTIGGVGLI ADLDDLIAGL PAEGDLALVI GETRGHLGQS ALVAEAFGIE AGDAPHVDLT
AERRNGEFLR AHGKLVSVAT DLSDGGLALA AFELAEAAGL GVTLDSAEIA QLFGEDQARY
LVACSEENAA QLVEAAQAAG VPLARVGRFG GEAVAFGGDA APLAELSQLY RSAFEKSLNL
ELA