Gene Pden_3949 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3949 
Symbol 
ID4582500 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1084712 
End bp1085308 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content60% 
IMG OID639771258 
ProductHNH endonuclease 
Protein accessionYP_917711 
Protein GI119386656 
COG category[V] Defense mechanisms 
COG ID[COG1403] Restriction endonuclease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGACG ACCATGGCGA ATTCCGAACC CAATTCGTGC GCGAGCCATC CTTCTTGCGC 
CACCATCCCG CACTGGTCCT AAACGCCGAT TTCAGACCGC TCAGCTATTA TCCGCTGTCG
CTCTGGCCCT GGCAGGAGGC GGTGAAGGCG GTGTTCCTGG ACCGTGTCCA GATCATCGCC
GAATATGACG AGGTGGTGCG CAGCCAGCAT CACGCGATAC GCATCCCCTC GGTCGTCGTG
CTGAAAGACT TCGTCAAACC CCAGAAGCGC GTGGCATTCA CGCGCTTCAA TCTTTTTCTG
CGGGACGAAT TCTGCTGCCA GTATTGCGGT GCGAAGGGCG AGTTGACCTT TGACCATGTC
CTGCCGCGCT CGCGCGGAGG GATCACCAGT TGGGAGAATG TTGTCGCCGC CTGTTCGCCC
TGCAACCTGA GGAAGGCCAA CAAACTGCTG AAGAATTCGG GACTTAGGCT GCGTCGCCCG
CCTCGCCGGC CCACGCCGGA GGAGATGCAC GCCATCGGCC GGCGCTTCCC GCCCAACCAT
CTGCACGACA GCTGGATGGA TTTTCTCTAC TGGGATACGG AGCTGATTGC GGAGTAG
 
Protein sequence
MLDDHGEFRT QFVREPSFLR HHPALVLNAD FRPLSYYPLS LWPWQEAVKA VFLDRVQIIA 
EYDEVVRSQH HAIRIPSVVV LKDFVKPQKR VAFTRFNLFL RDEFCCQYCG AKGELTFDHV
LPRSRGGITS WENVVAACSP CNLRKANKLL KNSGLRLRRP PRRPTPEEMH AIGRRFPPNH
LHDSWMDFLY WDTELIAE