| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3537 |
|---|
| Symbol | |
|---|
| ID | 4582092 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | + |
|---|
| Start bp | 686155 |
|---|
| End bp | 686913 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639770850 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_917303 |
|---|
| Protein GI | 119386248 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.298232 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGGAA TCGTGCTTGT CACCGGCGCC GCCGGTGGCA TCGGGGAAGC TGTTTGTCAT
CGCCTGGCTC AGGACGGCTT TGCGGTCCTT GCCACGGACC TGTCGCAGGA GGCGGCGGAG
CGGGTCGCGG ATACGCTGCC GGGGCGGGGC CATCGGGCCA TCGCGCTGGA TGTCGCGAAC
GAAGCCGCGG TGATCTCGGC CTTCGCCGAG GCCGGGTCGC TGGGCCGGCC CATCGACCAT
GTGGTCGCCG CCGCCGGGAT CCTGCTGTTC GCCGCCAATG GCGACCGCCC GCCGATCACC
GACATCCAGC TGGCCGACTG GGAGCGGACG CAGGCCGTCA ACTCCACCGG CACCTTCCTT
CTGCTGCGGG AATATCTGCG TGGCGCCAGC CGCCGGGCCA TGGCGGGCGG ACGTTTCGTG
GGCTTTGCCT CGGTGGCGGC CCAGCTTGGC GGCTATCGCT CCAGCTCGGC CTATATCGCC
TCGAAGGGGG CGGTGATGGC GCTGGTCAAG GCCGGCGCGC GCGAGGCGGC AAACCTGGGC
ATTACCGTGA ATGCGGTGGC GCCGGGCCTG ATCGATGCGC CGATGCTGCG GCAGTCGCTG
CCGCCGGAAC GGGACGCGAC GGTCGCGGCC AACATTCCGC TGAACCGCAT CGGCACGCCG
CAGGACGTGG CGGGGGCGGT GTCGTTCCTG ATGGGGCCGG ATGCGGCATA CATCACCGGC
GCCGTCGTCG ACGTGAACGG CGGCTATCGC ATGCAATGA
|
|---|
| Protein sequence | MSGIVLVTGA AGGIGEAVCH RLAQDGFAVL ATDLSQEAAE RVADTLPGRG HRAIALDVAN
EAAVISAFAE AGSLGRPIDH VVAAAGILLF AANGDRPPIT DIQLADWERT QAVNSTGTFL
LLREYLRGAS RRAMAGGRFV GFASVAAQLG GYRSSSAYIA SKGAVMALVK AGAREAANLG
ITVNAVAPGL IDAPMLRQSL PPERDATVAA NIPLNRIGTP QDVAGAVSFL MGPDAAYITG
AVVDVNGGYR MQ
|
|---|
| |