Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_3187 |
Symbol | |
ID | 4581751 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008687 |
Strand | + |
Start bp | 352908 |
End bp | 354701 |
Gene Length | 1794 bp |
Protein Length | 597 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639770511 |
Product | hypothetical protein |
Protein accession | YP_916964 |
Protein GI | 119385909 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3843] Type IV secretory pathway, VirD2 components (relaxase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCAG ACGATCACGA GTTCCGCATC CGTCCGGGCA GGCCGCGCTC GACCCCGGCG CCACGCAGCG GCAGCTTCGT CAATCAGGTG CTGCGCGCGG CACGGAAGGC GGGGCCGGTC AGGGCGTGGT CCTCCAAATC GAAAGGGTTT CCCCGCCCCG GTCACTCCAC CTTCGGGCGC GGGCGCGCCG GCTTCGGCCG CTCGCGGCTG TTCTCGCCCC AGCGCCGGGT GGTGGTGAAA GCGCGGGTGG TCCGGCACAG GGGCCGGTCC TTCCGCTCGG CGCCGATGAC GGCGCATCTC AGCTATCTCA AACGCGAGGG CGTCAGCCGC GACGACAGCG ACGGGCTGAT GTTCGATGCC ACCTCCGACG ATGCCGACGA TTCCGCCTTC GCCGAACGCT GCCAGGACGA CCGGCACCAT TTCCGCTTCA TCGTCTCGCC CGAGGATGCG TCCGACATGA CCGATCTGCG CGCCTTCACC CGCGATCTGG TCAGGCAGAT GGAGGCCGAT CTTGGCACGA AACTGGACTG GATCGCCGCC GATCACTGGA ACACCGACAA TCCGCATGTG CATCTGCTGG TCCGTGGCGT GGATGACGGC GGCAAGGATC TGGTGATTTC GCGCGACTAT ATCAGCTACG GCTTGCGCTC CCGCGCCGAG GATCTCGTCT CCATCGAACT CGGCCCCAGG CAGGAACACG AGATCCGCTC GGCCCTGGAA CGCGAGGTGA CGGCGGAACG CTGGACCCGG CTCGATGCGG CGATCCGGCG CCAGGCCGAC GATCTGGGAT TCATCGATCT GCGCCCCGAT GCGCCAATCC GGGGCGAACC CACCGGGCGG AGTCCCGAAC CTCGGCGATT GATGATCGGG CGGCTGCAAC ATCTGGAGAA GATGGGTCTC GCCACATTGG CCGGTCCCGG CGAATGGATG CTGGGGCTGG AGGCGGAGAC CACCCTGCGC GACCTCGGCC GGCGTGGCGA CATCGTCAGC CGGATGCACC GGGCCTTCGC CGCCCGCGAC GAGGAACGGG GCGTTCTGGA CTATGTCACC GACAGCGGCC AGGACGGCGC GTCCGTTATC GGCCGGCTGG TCGATCTGGG CCTGCATGAC GAACTGACCG GCGAGGCCTA TGCGGTGATC GACGGCACCG ACGGCCGCGC CCATCATATC CGCCTGCGCG GGATCGAGGC CTTCGATCAG GCCCCGCCGC TCGGCGGCAT CGTCGAACTG CGCCGCTTCG GCGGGCCGGA GGATCCGAAC CCGACCCTGC GGCTCGCCCA TCGTTCCGAT CTCGATCTGC AAGCCCAGAT CGCCGCGCCC GGCGCCACCT GGCTCGATTA CCGGCTGGTC GAGCGCAAAC CGATGCCGCT GGCCATGGGC GGTTTCGGCA AGGAGGTGCG CGAGGCGATG GATGCCCGCG CCGAGCATCT GGTCGGGGAA GGCCTCGCCC GGCGCGAGGG TGGGCGCATC CTGGTGCGGC GCCATCTGCT CGCAACCCTG CGCCGCCGCG AACTCGATGC CGTCGGCGCC GATCTCGCCC GGAAAACCGG GCTGCCGCAT GTGCAGGCCC GGCCCGGCGA TCATGTCGCC GGCACCTGCG GCCGGCGGAT GTCGCTCTCC TCGGGCCGCT TCGCCGTCAT CGAGGGTTCC GGACCCGGCG GAGGCCTGGG CTTTCAGCTG GTGCCCTGGT CGCGGGATCT CGAAGGCCAG CTCGGTCGGC ATGTCTCCGG CGTGGCGAAA CCCGGCGGCG GCATCGACTG GTCGCTTGGG CGCAGGCGCG ACCTCGGCCT CTGA
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Protein sequence | MSADDHEFRI RPGRPRSTPA PRSGSFVNQV LRAARKAGPV RAWSSKSKGF PRPGHSTFGR GRAGFGRSRL FSPQRRVVVK ARVVRHRGRS FRSAPMTAHL SYLKREGVSR DDSDGLMFDA TSDDADDSAF AERCQDDRHH FRFIVSPEDA SDMTDLRAFT RDLVRQMEAD LGTKLDWIAA DHWNTDNPHV HLLVRGVDDG GKDLVISRDY ISYGLRSRAE DLVSIELGPR QEHEIRSALE REVTAERWTR LDAAIRRQAD DLGFIDLRPD APIRGEPTGR SPEPRRLMIG RLQHLEKMGL ATLAGPGEWM LGLEAETTLR DLGRRGDIVS RMHRAFAARD EERGVLDYVT DSGQDGASVI GRLVDLGLHD ELTGEAYAVI DGTDGRAHHI RLRGIEAFDQ APPLGGIVEL RRFGGPEDPN PTLRLAHRSD LDLQAQIAAP GATWLDYRLV ERKPMPLAMG GFGKEVREAM DARAEHLVGE GLARREGGRI LVRRHLLATL RRRELDAVGA DLARKTGLPH VQARPGDHVA GTCGRRMSLS SGRFAVIEGS GPGGGLGFQL VPWSRDLEGQ LGRHVSGVAK PGGGIDWSLG RRRDLGL
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