| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3109 |
|---|
| Symbol | |
|---|
| ID | 4581673 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | + |
|---|
| Start bp | 292889 |
|---|
| End bp | 294370 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639770433 |
|---|
| Product | two component, sigma54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_916886 |
|---|
| Protein GI | 119385831 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCACGC CGCGCCCCTT TGTCCTGCTG GTGGATGACG AGCCGCATTC GCTTTCGGCG
ATGCGCATGG CGCTTGAGGA TGAGTTTGAA ATCCTGACCG CCCCGGATGC CGCCGCCGCC
GCCCGGCTGA TGGAAGAGGA ATGGGTGCAG GTAGTGGTCT GCGACCAGCG GATGCCCGGC
CAGACCGGGG TGGAGTTCCT GACCGGGCTG CGCGAGCGCT GGCCGGAAAC GGTGCGGCTT
CTGATAACCG GCTATACCGA TCCCTCGGCC ATCGTCGATG CGATCAATCT TGCCGGCATC
CATCAGTTCA TCGCCAAGCC CTGGCATCCC GACCAGTTGC TGATGGCGGT GCGCAATGCG
GCGCAGCTTT TCCATCTTGC GCGCGAGAAT GAACGTCTGG CGCTGGAGAT GCGCCGGCTT
GCCTCGACCT CCGAAACCCG GCTGGAAAAG CGCCGGCGGG CGTTGCGTCA GGGGCAGGGC
TTCGACAGCG TGCTGCGTGC GCCCAACTCG CCCATGAACG CCACGGTTGA TGCGGCGCGG
CATTATGCGG CCTTCGATGT GCCGGTGCTG CTGACGGGCG AGCAGGGCAC CGGCAAGGAG
CAGCTTGCGC AGGCGATGCA TCTGGCCTCG CTGAGGGCGG ACCGGCCCTT TTACGCGCTG
GATCTGACCG GAATGCCCGA TGAGCTGGTC ATGGTCGAGC TGCTGGGCGC GCGGCGCGGG
GCGGTGGCCG GGGGAACCAG CCGGATCGGC CTGATTCAAA AGGCGGATCG CGGGACGCTG
TATCTGTCGG GGATCGAGAC CATCACGCCC GAATTGCAGC TTGTGCTTTT GCGCATCCTG
TCCGGGCGCG GCTTCACGCC GGTCGGCGGG CAAGAGACGC TGACCAGCAA TCTGCGCCTG
ATCGCCGGCG CCGGCACGGA TTTGGCGGCT CTGGTCACCG AAGGGCGTTT TCGCGCCGAC
CTCTATTACG CTCTGGCGGT GGCCGAAATT GCGGTGCCGC CCCTGCGCGC TCGGCGCGGC
GATATCGCCA TGCTGGCCCA GCACATGCTG GCCGAGCTGG CGGCCCGTCA TGGCAAGCTG
GTGCATGGTT TTGACGGGCC CGCGCTGGAA TTTCTGGAAA GTTACGACTG GCCCGGCAAT
CTGCGCGAAT TGTCGAACGA GATCACCCGG ATGCTGATCC TTGCGCAAGA CAGCGTTCTG
GGCGCCGATC TGATCTCTCG CCCGATCCTG CAGGGTCCGC CGGGTGAGGA TGGCGCCGGC
CGTCTGACCC AGGCGGTGCT TGCCGGCGTC GGCAGCCTGA AAGAGCGGGT CGAACTGATC
GAAATGCGTA TCCTGCGCGA GACGCTGACC CGCCATCGCT GGAACAAAAG CCGCGCGGCG
GCCGAGCTGG GTGTGTCGCG GGTGGGCCTG CGCGCCAAGC TGGACCGCTA TGGCGTCAAG
GACCCGGCCG AGCGTCAGGC CACCCCGGAA GAGGAGGAAT AG
|
|---|
| Protein sequence | MPTPRPFVLL VDDEPHSLSA MRMALEDEFE ILTAPDAAAA ARLMEEEWVQ VVVCDQRMPG
QTGVEFLTGL RERWPETVRL LITGYTDPSA IVDAINLAGI HQFIAKPWHP DQLLMAVRNA
AQLFHLAREN ERLALEMRRL ASTSETRLEK RRRALRQGQG FDSVLRAPNS PMNATVDAAR
HYAAFDVPVL LTGEQGTGKE QLAQAMHLAS LRADRPFYAL DLTGMPDELV MVELLGARRG
AVAGGTSRIG LIQKADRGTL YLSGIETITP ELQLVLLRIL SGRGFTPVGG QETLTSNLRL
IAGAGTDLAA LVTEGRFRAD LYYALAVAEI AVPPLRARRG DIAMLAQHML AELAARHGKL
VHGFDGPALE FLESYDWPGN LRELSNEITR MLILAQDSVL GADLISRPIL QGPPGEDGAG
RLTQAVLAGV GSLKERVELI EMRILRETLT RHRWNKSRAA AELGVSRVGL RAKLDRYGVK
DPAERQATPE EEE
|
|---|
| |