Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_3098 |
Symbol | |
ID | 4581662 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008687 |
Strand | + |
Start bp | 284286 |
End bp | 286079 |
Gene Length | 1794 bp |
Protein Length | 597 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 639770422 |
Product | nickel-dependent hydrogenase, large subunit |
Protein accession | YP_916875 |
Protein GI | 119385820 |
COG category | [C] Energy production and conversion |
COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGATCA ACACGCCGAA TGGCTATACC CTCGACAATT CCGGGCGCCG CATCGTGGTG GACCCGGTCA CCCGGATCGA AGGGCATATG CGCTGCGAGG TCAACGTGGA TGATCAGGGT GTCATCCGCA ACGCGGTCTC GACCGGGACG ATGTGGCGCG GGCTGGAGGT CATCCTGAAA GGGCGCGACC CGCGCGACGC CTGGGCCTTT GTCGAGCGGA TCTGCGGCGT CTGCACTGGC ACGCATGCGC TGACCTCGGT GCGCGCGGTC GAGGATGCGC TTGGGATCAT GATCCCCGAC AATGCCAACT CGATCCGCAA CATGATGCAG CTGGCGCTGG AGATCCACGA TCATATCGTG CATTTCTATC ACCTGCATGC GCTGGACTGG GTGAATCCGG TCAATGCCCT GCGCGCCGAC CCCAAGGCGA CCAGCGAATT GCAGCAGATG GTCTCGCCCT CGCATCCGAT GTCATCGCCG GGCTATTTCC GCGATGTGCA GAACCGGCTG AAGAAATTCG TCGAATCCGG GCAACTGGGG CTGTTCAAGA ACGGCTATTG GGACAATCCG GCCTATCTTC TGCCGCCCGA AGCCGATCTG ATGGCGACGA CTCACTATCT GGAGGCGCTT GATCTGCAAA AGGAAATCGT CAAGGTCCAT ACGATCTTTG GCGGCAAGAA CCCGCATCCG AACTGGCTGG TGGGCGGGGT GCCATGCCCG ATCAATATCG ACGGCACCGG ATCTGTCGGC GCGATCAATA TGGAGCGGCT GAACCTCGTC TCCTCGATCA TTGATCTGTG CGACGAGTTC AACAAGAACG TCTATATTCC CGATGTGATC GCCATCGGCG GCTTTTACAA AAGCTGGCTT TACGGGGGCG GGCTGTCGTC GCAGGCGGTC ATGGCCTATG GCGACATTCC CGAGAACCCG AATGACTTTT CGCCCGAGCA ACTGCATTTG CCGCGCGGCG CGATCATCAA CGGCAATCTC AACGAGGTGC ATGACGTCGA TCCGCGCGAC CCCGAGCAGG TGCAGGAATT CGTCGACCAT TCCTGGTATT CGTATGGCGA TCCGGGCCGC GGCCTGCATC CCTGGGATGG TGAAACCAAT CCGAAATTCG AGCTGGGGCC GAACCACAAG GGCACGAAAA CTCGCATCGA ACAGCTGGAT GAATCCGCGA AATATTCCTG GATCAAGGCG CCGCGCTGGC GAGGTCACGC GATGGAGGTC GGCCCGCTTG CGCGCTATAT CATCGGCTAC GCCAAGGGGC ATGAGGACAT CAAAAATCAG GTCGATGGCC TGTTGAGAAC CATGGATTTG CCCTTCGAGG CGCTGTTCTC GACTCTGGGC CGCACGGCGG CGCGGGCGCT GGAATCGGAA TATTGCGGGC GCCTGCAACG GCATTTCTTC GACAAGATGG TGCGGAACAT CAAGAATGGC GATCAAAGCA CCGCCAATGT CGAGAAATGG GATCCTTCGA CCTGGCCGAA AGAGGCCAAG GGCGTCGGCA TGACCGAGGC ACCGCGCGGC GCGCTTGGCC ATTGGATCCG CATCAAGGAC GGCCGGATCG AGAATTACCA ATGCGTGGTG CCGACCACCT GGAATGGCTC GCCCCGCGAC AGCCAGGGCA ATATCGGTGC CTTCGAGGCC AGCCTGATGA ACACGCCCAT GGAGCGCCCG GATGAGCCGG TCGAAATCCT GCGCACGCTG CACAGTTTCG ACCCCTGCCT GGCCTGCTCT ACCCATGTCA TGTCACCGGA TGGTGACGAG CTTGCCGCCG TCAAAATTCG CTGA
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Protein sequence | MTINTPNGYT LDNSGRRIVV DPVTRIEGHM RCEVNVDDQG VIRNAVSTGT MWRGLEVILK GRDPRDAWAF VERICGVCTG THALTSVRAV EDALGIMIPD NANSIRNMMQ LALEIHDHIV HFYHLHALDW VNPVNALRAD PKATSELQQM VSPSHPMSSP GYFRDVQNRL KKFVESGQLG LFKNGYWDNP AYLLPPEADL MATTHYLEAL DLQKEIVKVH TIFGGKNPHP NWLVGGVPCP INIDGTGSVG AINMERLNLV SSIIDLCDEF NKNVYIPDVI AIGGFYKSWL YGGGLSSQAV MAYGDIPENP NDFSPEQLHL PRGAIINGNL NEVHDVDPRD PEQVQEFVDH SWYSYGDPGR GLHPWDGETN PKFELGPNHK GTKTRIEQLD ESAKYSWIKA PRWRGHAMEV GPLARYIIGY AKGHEDIKNQ VDGLLRTMDL PFEALFSTLG RTAARALESE YCGRLQRHFF DKMVRNIKNG DQSTANVEKW DPSTWPKEAK GVGMTEAPRG ALGHWIRIKD GRIENYQCVV PTTWNGSPRD SQGNIGAFEA SLMNTPMERP DEPVEILRTL HSFDPCLACS THVMSPDGDE LAAVKIR
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