Gene Pden_3089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3089 
Symbol 
ID4581653 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp271811 
End bp272704 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content50% 
IMG OID639770413 
Producthelix-turn-helix domain-containing protein 
Protein accessionYP_916866 
Protein GI119385811 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.830597 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATTG AGAGCCGGCA AAACTCATCA GATTGCTTGC CTCCCCGAGC GATTGATATT 
TTTCCCCCGC AATGGGGTCG GAAATATTAT AGCCCATACG TTGACCTAAT GCTAACACAA
ACAAGGGAAG GCAAGATAGA GTTTGCCGCC AGCTCGAATT TCATCCTCGT CCTCCTGACG
CCGCAGGCAC GGAGGAAAAC CATGCTGAGC TCATCTCGCC GTCAGGAATA TTCCGCATCT
CCGGGCACGG TGGAATTGGT GCCAGCCGGA GAAAACTACA CAGCAGAATG GTCGGAGCCG
AAAGAGAACA TACTTCTTTC TGTCACGCCT GAGAAATTGA ACAACCTGAG CATCAGGGAA
TACGATCTTG AATTATCAGA TCCCCCATTG TTCAAGGTTG GAGATGTGGA TCCAATTGCA
CACAAAATAG CCATGTTGCT AAGGAATGGA ATCATCAATG ACGGGGATAA TCATCTTTAC
CTGGAGTCCC TCAGCATGGC ATTGCTTTCC CACCTCATCA GACGAATGAC CAATGCCGAC
AACCGAGTGG ATCACAACCC GAAGCGAGGC GGACTGGCAT CACATATTCG GCGCAGGGTT
GTCGAGCATA TACACGAAAA CATCCATCGC AGGATAACGA TCAGTGAACT TTCCGACATA
TCCGGTATGT CTTGCGGGCA TTTTTCGCGT AGTTTCGGCG TGGAGATGGG TGTGTCCCCG
CATCAATACG TTATGAAACT GAGGGCCGAG CGTGCAATGT CATCTATTGC CAATACAGAT
TCGCACATCT CGCAGATAGC GAACGCGCAT GGCTTCTCTA GCCAGTCTCA CATGATGGTT
GTCATGAAGA AATTTTTCGG CACAACACCG GGAGAGTTGA GGCGGAAGCG ATAA
 
Protein sequence
MKIESRQNSS DCLPPRAIDI FPPQWGRKYY SPYVDLMLTQ TREGKIEFAA SSNFILVLLT 
PQARRKTMLS SSRRQEYSAS PGTVELVPAG ENYTAEWSEP KENILLSVTP EKLNNLSIRE
YDLELSDPPL FKVGDVDPIA HKIAMLLRNG IINDGDNHLY LESLSMALLS HLIRRMTNAD
NRVDHNPKRG GLASHIRRRV VEHIHENIHR RITISELSDI SGMSCGHFSR SFGVEMGVSP
HQYVMKLRAE RAMSSIANTD SHISQIANAH GFSSQSHMMV VMKKFFGTTP GELRRKR