| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3073 |
|---|
| Symbol | |
|---|
| ID | 4581637 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | - |
|---|
| Start bp | 253108 |
|---|
| End bp | 254607 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639770397 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_916850 |
|---|
| Protein GI | 119385795 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3333] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.36789 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCGC TCATCCACCT GATGCATGGT TTCGGCACCG CGCTGGACCC GATGAACCTG
ATGTTCGCGG CCATCGGCGT CCTGCTGGGC ACTGCCGTCG GCGTGCTGCC GGGGATCGGC
CCGGCCCTGA CGGTCGCCCT GCTGCTGCCG ATCACCTTCA AGCTGGACCC GGGCGGCTCG
CTCATCATGT TCGCGGGCAT CTATTACGGC GGCATGTATG GCGGCTCGAC CACCGCGATC
CTGCTGAACA CGCCCGGCGA AAGCGCCTCG GTCGTCACGG CGCTCGAGGG CAACCAGATG
GCCCGGCGCG GTCGCGGCGG CCCGGCGCTG GCGACCGCCG CAATCGGCTC TTTCGTCGCG
GCGCTGATCG CCACGGCGGG GCTCGCGTTC TTTGCGCCGA TCCTGGTTAA GGTGGCGGTG
AAGTTCGGGC CTTGGGACTA TTTCGGGCTG ATGCTGATCG CCTTCGTCAC CGTCTCGGCC
ACCTTCGGCT CGTCGCCCCT GCGCGGATTG ACCAGCCTGG GCATCGGCTT GTGGCTGGGG
CTGATCGGTA TCGACCAGTT GACCGGGCAG ACGCGGCTGG CCTTCGGCGT GCCGAACCTG
CTGGACGGGA TCGAGGTCAC GACGCTGGCC GTGGGCCTGT TCGCCCTGGG GGAATGCCTG
TTCGTCGCCT CGCGCCACCT GTTCAACGAC GAAAAGCCCA TGGCGATCAA GGGCTCGATC
TGGATGTCGC GCGAGGATTG GCGGCGGTCG TGGAAGCCCT GGCTGCGCGG CACGGCGGTC
GGCTTCCCCA TCGGCGCCCT GCCAGCCGGC GGCGCCGAGA TCCCGACCTT CCTCAGCTAC
ACGATGGAGC GGAAGCTGGC GGAAAAGCCC GAGGAATTCG GCCAGGGCGC CATCGAGGGC
GTGGCCGGCC CCGAGGCGGC CAACAACGCC TCGGCCGCGG GAACGCTGGT GCCGCTCTTG
ACGCTGGGCC TTCCGACCTC GGCCACGGCG GCAGTCATGC TGGCCGGGTT CCAGCAATAC
AACCTGCAAC CCGGCCCGCT GCTTTTCGTG CAGCATCCGG CGCTGGTCTG GGGCCTCGTC
GCCTCACTCT TCATAGCCAA TATCATGCTG CTGGTGCTGA ACCTGCCGCT GGTCGGGCTT
TGGGTGCGGC TGCTGAAGAT CCCGCTGCCC TGGCTTTACG CCGGCATCCT GGTCTTTGCC
TGCATGGGCA CCATCGCCGC CAATCCTTCG GTGGTCGAGC TGATGCTGCT GGTCGGTTTC
GGCCTGCTGG GCTTCGTCAT GCGGCGATAC GACTATCCGG TCGCGCCGGT GGTGGTGGGC
CTGATCCTGG GCCCGCTCGC CGACAGCCAG CTACGCCGCG CGCTGCAGAT GAGCCTGGGC
GACCCAATGA TCCTGCTGCA GCATCCCGGC TCGGCCACGA TGATCGCCAT TGCCACGCTG
GCGCTGGTCG CCCCCTTCCT CTTCAAGGGC CTGGCCCGGT TCCGGCAGGA CGAGGATTGA
|
|---|
| Protein sequence | MDSLIHLMHG FGTALDPMNL MFAAIGVLLG TAVGVLPGIG PALTVALLLP ITFKLDPGGS
LIMFAGIYYG GMYGGSTTAI LLNTPGESAS VVTALEGNQM ARRGRGGPAL ATAAIGSFVA
ALIATAGLAF FAPILVKVAV KFGPWDYFGL MLIAFVTVSA TFGSSPLRGL TSLGIGLWLG
LIGIDQLTGQ TRLAFGVPNL LDGIEVTTLA VGLFALGECL FVASRHLFND EKPMAIKGSI
WMSREDWRRS WKPWLRGTAV GFPIGALPAG GAEIPTFLSY TMERKLAEKP EEFGQGAIEG
VAGPEAANNA SAAGTLVPLL TLGLPTSATA AVMLAGFQQY NLQPGPLLFV QHPALVWGLV
ASLFIANIML LVLNLPLVGL WVRLLKIPLP WLYAGILVFA CMGTIAANPS VVELMLLVGF
GLLGFVMRRY DYPVAPVVVG LILGPLADSQ LRRALQMSLG DPMILLQHPG SATMIAIATL
ALVAPFLFKG LARFRQDED
|
|---|
| |