Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_3038 |
Symbol | |
ID | 4581604 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008687 |
Strand | - |
Start bp | 214845 |
End bp | 216509 |
Gene Length | 1665 bp |
Protein Length | 554 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639770364 |
Product | choline/carnitine/betaine transporter |
Protein accession | YP_916817 |
Protein GI | 119385762 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACAGA TAAGCCCATC CGAACCGTTG ATCGCCGACG CCGGCATCGA GGCCCTGCCG CCGCCCGAGG GCCCGACCCA GATCATCGCG ACCGATTACG AGATCGGACA GGACAATATC GAAGGCGTCA AGCCGGTCGC CTTCGACATC CACAACCCCG TCTTCATGAT CTCCGGCGTC GCGGTGGTGG TCTTTACCGC GGCCACGCTG CTGTTCCCCT CGGTGCTGGG GCCGTTCTTC GGCGGATTGC GCGACGTCGT TACCAGCAAT TTCGACTGGT TCTTCCTGAT CGCCGGCAAT GTCTTCGTGC TGCTGTGCGT TGGCCTGATC CTGTCGCCGC TGGGCTCGGT CCGGCTGGGC GGCCCCGAGG CCACGCCCGA TTTCTCGCTG ACCGGCTGGT TTTCGATGCT GTTTGCCGCC GGCATGGGCA TCGGCCTGAT GTTCTATGGC GTCAGTGAGC CGCTGGGCCA TTTCACCGCC GCATTGGGCG GGCCGGTGGT CGAAAACGGC GTGCGCACCG ATTGGGCGCC GCTGGACGGC GCGCCGGGGG ACGAACTGGG CGCGCGGCGG CTGGCGATGG CCGCGACGAT CTTTCACTGG GGCCTGCATC CTTGGGCGAT CTATGCGGTC GTGGCGCTGG CTCTGGCGCT GTTTGCCTAT AACAAGGGGC TGCCGCTGAC GCTGCGCTCG GTGTTCTATC CGATTCTGGG CGAACGGGTC TGGGGCTGGC CGGGCCATGT CGTGGATGTG CTGGCGGTGA TGGCGACGCT GTTCGGGCTG GCCACCTCGC TGGGGATCGG CGCCGAGCAG GCATCGGCGG GTTTCCATTT CCTGTTCGGC TGGAGCACCG CGCTGACCGC CAAGATCGTG CTGATCGTCA TCATCACCGG GGTGGCCACG GCCTCGGTCG TGCTGGGCGT CGAAAAGGGC GTCAAGCGCC TGTCCGAGAT CAACATGATC CTTGCGGTCC TGCTGCTGCT TTTCGTGATC CTGACCGGGC CGACCTGGCA GATCCTGACC GGCTTTTTCG GCAATCTGGC CGCCTATGGC GCCAAGATCC TGCCGCTGTC CAACCCGTTC GGGCGCACCG ACGACAACTT CCGCCATGGC TGGACCGCCT TCTATTGGGC TTGGTGGATC AGCTGGTCGC CCTTTGTCGG CATGTTCATC GCCAGGGTCT CGCGCGGGCG GACCGTGCGG CAGTTCCTGA CCGCGGTGCT GATCGTGCCC TCGCTGATCT CGGTCCTGTG GATGACGGCC TTTGGCGGCA CCGCGATTTC CGAGACATTG GCCGGCTTTT CGGGTGTGAC CGATGCGGCG CTGGAACTGC AGCTGTTCCA GATGCTGTCG CAGCTGCCGC TGACCGCGAT TTCCAGCTTC ATCGGCATTG TTCTGGTGAT CGTGTTCTTC GTCACCTCCT CGGATTCCGG CTCGCTGGTG ATCGACACCA TCGCGGCGGG CGGCAAGATC CACGCGCCGG TGCCGCAGCG CATCTTCTGG TGCAGTTTCG AAGGGCTGGT CGCCATCGCC CTGCTTCTGG GTGGCGGGCT GACGGCCTTG CAGGCGATGG CGGTTTCGAC CGGCCTGCCC TTCACGCTGG TGCTGCTGGG CGCCTGCTGG GCCATTCTCA AGGGCCTGCT GGCCGAAAAG CGGGAACTGA CCTGA
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Protein sequence | MSQISPSEPL IADAGIEALP PPEGPTQIIA TDYEIGQDNI EGVKPVAFDI HNPVFMISGV AVVVFTAATL LFPSVLGPFF GGLRDVVTSN FDWFFLIAGN VFVLLCVGLI LSPLGSVRLG GPEATPDFSL TGWFSMLFAA GMGIGLMFYG VSEPLGHFTA ALGGPVVENG VRTDWAPLDG APGDELGARR LAMAATIFHW GLHPWAIYAV VALALALFAY NKGLPLTLRS VFYPILGERV WGWPGHVVDV LAVMATLFGL ATSLGIGAEQ ASAGFHFLFG WSTALTAKIV LIVIITGVAT ASVVLGVEKG VKRLSEINMI LAVLLLLFVI LTGPTWQILT GFFGNLAAYG AKILPLSNPF GRTDDNFRHG WTAFYWAWWI SWSPFVGMFI ARVSRGRTVR QFLTAVLIVP SLISVLWMTA FGGTAISETL AGFSGVTDAA LELQLFQMLS QLPLTAISSF IGIVLVIVFF VTSSDSGSLV IDTIAAGGKI HAPVPQRIFW CSFEGLVAIA LLLGGGLTAL QAMAVSTGLP FTLVLLGACW AILKGLLAEK RELT
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