Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_2944 |
Symbol | |
ID | 4581511 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008687 |
Strand | + |
Start bp | 111383 |
End bp | 113182 |
Gene Length | 1800 bp |
Protein Length | 599 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 639770271 |
Product | thiamine biosynthesis protein ThiC |
Protein accession | YP_916724 |
Protein GI | 119385669 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.858401 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCAGA CCATCCCGCA AATCACCACC GGCCCGCTGC CCGGATCGCG CAAGATCCAT GTGCCGGGCA GCCTGCACGA CATCCGCGTG CCCATGCGCG AGATCGCCGT CTCGAACGAG CCGCCGCTGG TCGTCTATGA CAGCTCCGGC CCCTATACCG ACGCGGCGGT GCAGGCCGAC ATCGCCCGCG GCCTGCCGGA CCTGCGCGGC GACTGGCAGC TGCGGCGCGG CGACGTGGCG CCCTATCCCG GCCGGCAGGT CACCGCCGCC GACAACGGCT TTGCCGAGGG CGCGCGGCTG ACCCCCGCCT TTCCGCTGCG CCGCGATCCC CTGCGCGCGG CGGCGGGCCG GGCGGTGACG CAGCTGGCCT ATGCCCGCGC CGGCATCGTC ACCCCCGAGA TGGAGTTCGC GGCCATCCGC GAGAACGAGG GGCGGCTGGT CGCCCATGCC CGCGACGGCG CGCCGATGGG GGCCGAGCTG CCCGATCTGG TGACGCCGGA ATTCGTGCGG GCCGAGATCG CCGCCGGCCG CGCCATCATC CCGGCCAACA TCAACCACCG CGAGTTGGAG CCGATGATCA TCGGCCGCAA TTTCAAGGTC AAGATCAACG CCAATATCGG CAACTCCGCC GTCACCTCCA GCATGGAGGA GGAGGTCGAG AAGATGGTCT GGGCGATCCG CTGGGGCGCG GACACGGTGA TGGACCTGTC CACCGGCCGC AACATCCACA ACATCCGCGA CTGGATCATC CGCAACGCGC CGGTGCCCAT CGGCACCGTG CCGCTGTATC AGGCGCTGGA GAAGGTCGGC GGCGTGGCCG AGGATCTGAG CTGGGAGGTG TTTCGGGACA CGCTGGTCGA ACAGGCCGAG CAGGGCGTGG ACTATTTCAC CATCCATGCC GGGGTGCGGC TGCACATGAT CCCGCTGACC GCGCGGCGGG TGACGGGGAT CGTCAGCCGC GGCGGCTCGA TCATGGCGAA ATGGTGCCTG CACCACCACC GCGAGAGCTT CCTGTATGAG CGCTTCGACG AGATCTGCGA GATCATGCAG GCCTATGACG TCAGCTTCAG CCTGGGCGAC GGGCTGCGTC CCGGCTCGAT CGCCGATGCC AATGACGAGG CGCAATGCGC CGAACTGCGC ACCCTGGGCG AGCTGACGAA GATCGCCTGG GCCCGGGATT GCCAGGTGAT GATCGAGGGG CCGGGCCATG TGCCGATGCA CAAGATCAAG GCCAATATGG AGGAGCAGCT GCGGCATTGC CACGAGGCGC CGTTCTATAC GCTTGGCCCG CTGACCACCG ATATCGCACC GGGCTACGAC CACATCACCT CGGCCATCGG GGCGGCGATG ATCGGCTGGT TCGGCACGGC GATGCTGTGC TATGTCACGC CCAAGGAGCA TCTGGGCCTG CCCGACCGCG ACGACGTCAA GACCGGCGTC ATCACCTACA AGCTGGCCGC CCATGCCGCC GATCTGGCCA AGGGCCATCC CGGGGCGCAG CGGCGCGACG ATGCGCTGTC GCGCGCGCGG TTCGAGTTCC GCTGGCAGGA CCAGTTCAAC CTGGGCCTGG ACCCGGACAC CGCGCAGGCC ATGCATGACG AGACCCTGCC GAAAGAGGCG CACAAGCTGG CGCATTTCTG TTCGATGTGC GGGCCGAAGT TCTGCTCGAT GCGGATCTCG CACGACATCC GGGCCGAGGC TGAAAAGCAG GCCGGCATGG CGCGCATGGC CGAGAAGTTC CGCGAGGGCG GGGCGCTTTA CCTGCCGGTT GCGGAAAGCG TGGCGGAGGC GGCCGATTGA
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Protein sequence | MSQTIPQITT GPLPGSRKIH VPGSLHDIRV PMREIAVSNE PPLVVYDSSG PYTDAAVQAD IARGLPDLRG DWQLRRGDVA PYPGRQVTAA DNGFAEGARL TPAFPLRRDP LRAAAGRAVT QLAYARAGIV TPEMEFAAIR ENEGRLVAHA RDGAPMGAEL PDLVTPEFVR AEIAAGRAII PANINHRELE PMIIGRNFKV KINANIGNSA VTSSMEEEVE KMVWAIRWGA DTVMDLSTGR NIHNIRDWII RNAPVPIGTV PLYQALEKVG GVAEDLSWEV FRDTLVEQAE QGVDYFTIHA GVRLHMIPLT ARRVTGIVSR GGSIMAKWCL HHHRESFLYE RFDEICEIMQ AYDVSFSLGD GLRPGSIADA NDEAQCAELR TLGELTKIAW ARDCQVMIEG PGHVPMHKIK ANMEEQLRHC HEAPFYTLGP LTTDIAPGYD HITSAIGAAM IGWFGTAMLC YVTPKEHLGL PDRDDVKTGV ITYKLAAHAA DLAKGHPGAQ RRDDALSRAR FEFRWQDQFN LGLDPDTAQA MHDETLPKEA HKLAHFCSMC GPKFCSMRIS HDIRAEAEKQ AGMARMAEKF REGGALYLPV AESVAEAAD
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