Gene Pden_2820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_2820 
Symbol 
ID4581399 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp2837634 
End bp2838227 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content68% 
IMG OID639770146 
ProductRNA polymerase sigma factor 
Protein accessionYP_916600 
Protein GI119385544 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.682095 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGATC GAAAATCGGC GCGAACCGCC CGTTCCGGCG CCCATGGCGA TCCTCGGGAC 
GAGCTGGTCG ATCATCTGCC GGCGTTGCGC GCATTCGCGC TGTCGCTGAC GCGCGAGGGG
GCCTCGGCCG ACGACCTGGT GCAGGACACC ATCGTCAAGG CCTGGACCCA TATCGACAAG
TTCCAGCCCG GCACCAACCT GCGGGCCTGG TTGTTCACCA TCCTGCGCAA CACCTTCTAT
TCCGCCCGCC GCAAGACCAA GCGCGAGGTC AGCGATACCG ACGGGGTCCA TGCCGCCCGT
CAGGCCACCC GGCCCGAACA TGACGGCCGC CTGGCGCTGA ACGATTTCCG CGCCGCCTTC
GAGCAATTGC CCGACGAGCA GCGCGAGGCG CTGATCCTGG TGGGCGCCTC GGGCTTTTCC
TATGAGGAAG CGGCGGCGAT GACCGGGGTC GCCGTGGGCA CCGTCAAGTC GCGCGCCAAT
CGCGGCCGCC GCCGGCTGGC CGAGCTTCTG CAACTGGAGG AGGGCGAGGA GCTGGAGATG
ACCGACCGCG CCACGCTGGC GGTGATGGCG CAGAACACCC CGATCCTGCG CTGA
 
Protein sequence
MTDRKSARTA RSGAHGDPRD ELVDHLPALR AFALSLTREG ASADDLVQDT IVKAWTHIDK 
FQPGTNLRAW LFTILRNTFY SARRKTKREV SDTDGVHAAR QATRPEHDGR LALNDFRAAF
EQLPDEQREA LILVGASGFS YEEAAAMTGV AVGTVKSRAN RGRRRLAELL QLEEGEELEM
TDRATLAVMA QNTPILR