| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2759 |
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| Symbol | |
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| ID | 4580394 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 2777503 |
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| End bp | 2779713 |
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| Gene Length | 2211 bp |
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| Protein Length | 736 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639770085 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_916539 |
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| Protein GI | 119385483 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00521923 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGCCGC CATTTGACAC GGGACGCGAC CGGAAGGGCC GGCGCGTCGC CAGAGGAAAC
CAGATGTTTG ATGAAGTGAA GAAATCCATC CAGTGGGGCC AGGAAACGCT CACGCTGGAA
ACGGGCAAGG TTGCCCGTCA GGCCGACGGC TCGGTCATCG CCACCCTGGG CGAGACCAGC
GTCATGGCCA ACGTCACCTT CGCCAAGGAA CCCAAGCCCG GCCAGGACTT CTTCCCCCTG
ACGGTGCATT ACCAGGAAAA ATACTATGCT GCCGGCAAGA TCCCCGGCGG CTTCTTCAAG
CGCGAGGCCC GTCCTTCGGA AAAGGAAACG CTGACCGCGC GCCTGATCGA CCGCCCGATC
CGCCCGCTTT TCGTCCCCGG CTTCAAGCAT GAAGTGCTGG TGATGTGCAC GGTGCTGAGC
CACGACCTGG TCAACGATCC CGACATCGTC GCCATGATCG CCGCCTCGGC CGCGCTGACG
ATTTCCGGCG TGCCCTTCAT GGGCCCGATC GCCGCCGCCC GCGTCGGCTT CGCCGATGGC
GAATATGTGC TGAACCCCGA GGTCCAGGAC ATGGACCACC TGCGTCTGAA CCCCGAGCAG
CGGCTGGACC TGGTCGTCGC CGGCACCCGC GATGCGGTGA TGATGGTCGA ATCGGAAGCC
TATGAGCTGA CCGAGGCCGA GATGCTGGGC GCGGTGAAGT TCGGCCACGA AGCGATGCAG
CCGGTGATCG ACCTGATCAT CGACCTGGCC GAGGCCGCCG CGAAGGAACC CTTCGAGTTC
GCCTCGCCGG ATTACAGCGC GCTTTATGCC CGGGTGAAAT CGCTGGGCGA GGCCGATATG
CGCGCCGCCT ATGCCATCCA CGACAAGGGT GAGCGCCGCG ACGCCATCGA GGTCGCCAAG
GCGAAGGTCC TGGCGGGCCT GTCCGAAGAG GAACTGCTGG ACCCGAACCT GGGCTCGGCG
CTGAAGAAGC TGGAATCGGG CATCCTGCGT GGCGGCATCA TCGACGGCCG TCCGCGCATC
GACGGCCGCG ACAACAAGAC CGTGCGGCCC ATCGATTGCG AAGTCGGCTT CCTGCCCCGG
ACCCACGGCT CGTCGCTGTT CACCCGCGGC GAGACGCAGG CGCTGGTCGT GACCACGCTG
GGCACCGGCG ACGATGAGCA GATCATCGAC GCGCTGCATG GCAACTCCCG CAGCAACTTC
CTGCTGCATT ACAACTTCCC GCCCTATTCG GTGGGCGAGG TGGGCCGCGT CGGCAGCCCC
GGCCGTCGCG AGATCGGCCA CGGCAAGCTG GCCTGGCGCG CGCTGCAAGC CGTGCTGCCG
GCGCCGACCG ACTTCCCCTA TACCATCCGC GTGGTCAGCG AGATCACCGA GTCGAACGGC
TCGTCCTCGA TGGCCTCGGT CTGCGGCGGT TCGCTGTCGA TGATGGATGC GGGCGTGCCG
CTGAAGGCGC CGGTCGCCGG CGTCGCCATG GGCCTGATCC TGGAAGAGGA CGGCCGCTGG
GCGGTGCTGA CCGACATCCT GGGCGACGAG GACCACCTGG GCGACATGGA CTTCAAGGTC
GCTGGGACGG AAAACGGCAT CACCAGCCTG CAGATGGACA TCAAGGTCGC GGGCATCACG
CCCGAGATCA TGGAACAGGC GCTGGCGCAG GCCAAGGATG GCCGTCTGCA CATCCTGGGC
GAAATGTCCA AGGCTCTGTC CGAAGGCCGC CGCGAGTTCA GCGCCCATGC CCCGCGCATC
GAGACCATGA CCATTCCGAC CGACAAGATC CGCGAAGTGA TCGGCTCGGG CGGCAAGGTG
ATCCGCGAGA TCGTCGAGAC CTCGGGTGCC AAGGTGGACA TCAGCGACGA CGGCACCATC
AAGATCGCCT CGGCCAATGC CGATTCGATC AAGAAGGCCT ATGACATGAT CTATTCGATC
GTGGCCGAGC CGGAAGAGGG CAAGATCTAT GTCGGCAAGG TCGTGAAGCT GGTCGATTTC
GGCGCCTTCG TGAACTTCTT CGGCAAGCGC GACGGTCTGG TGCATGTCAG CCAGATCGCC
GGCAAGCGCC TGAACCACCC CAACGAGGTG CTGAAGGAAG GCCAGGAGGT CAAGGTCAAG
CTGCTGGGCT TCGACGACCG CGGCAAGGTG CGCCTTGGCA TGAAGATGGT CGACCAGGAG
ACCGGCGAGG AGATCGCCCC CGAGAAGAAA GAAGAGACCG CCGAAGGCTG A
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| Protein sequence | MGPPFDTGRD RKGRRVARGN QMFDEVKKSI QWGQETLTLE TGKVARQADG SVIATLGETS
VMANVTFAKE PKPGQDFFPL TVHYQEKYYA AGKIPGGFFK REARPSEKET LTARLIDRPI
RPLFVPGFKH EVLVMCTVLS HDLVNDPDIV AMIAASAALT ISGVPFMGPI AAARVGFADG
EYVLNPEVQD MDHLRLNPEQ RLDLVVAGTR DAVMMVESEA YELTEAEMLG AVKFGHEAMQ
PVIDLIIDLA EAAAKEPFEF ASPDYSALYA RVKSLGEADM RAAYAIHDKG ERRDAIEVAK
AKVLAGLSEE ELLDPNLGSA LKKLESGILR GGIIDGRPRI DGRDNKTVRP IDCEVGFLPR
THGSSLFTRG ETQALVVTTL GTGDDEQIID ALHGNSRSNF LLHYNFPPYS VGEVGRVGSP
GRREIGHGKL AWRALQAVLP APTDFPYTIR VVSEITESNG SSSMASVCGG SLSMMDAGVP
LKAPVAGVAM GLILEEDGRW AVLTDILGDE DHLGDMDFKV AGTENGITSL QMDIKVAGIT
PEIMEQALAQ AKDGRLHILG EMSKALSEGR REFSAHAPRI ETMTIPTDKI REVIGSGGKV
IREIVETSGA KVDISDDGTI KIASANADSI KKAYDMIYSI VAEPEEGKIY VGKVVKLVDF
GAFVNFFGKR DGLVHVSQIA GKRLNHPNEV LKEGQEVKVK LLGFDDRGKV RLGMKMVDQE
TGEEIAPEKK EETAEG
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