| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2412 |
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| Symbol | |
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| ID | 4580746 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 2409815 |
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| End bp | 2411014 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639769741 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_916196 |
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| Protein GI | 119385140 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.449428 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.247685 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGGCA GTCAGGCTGC AAATACCGAA GACGTCGGCC TCATCTTCGG CGAAGAGGAC
GAGGTGCGCC TCACCCGCTC GAAACGGGTC GTGCTGGCCT TTTTCGCATT GCTGGCAAGC
GGCCTTGTCT GGGCGCATTT CGCGGTGCTG GACGAAGTGT CTACGGGCAC GGCCCGCGTC
GTGCCCACCA TGCGGGAACA GGTGATCCAG TCGCTGGAGG GCGGGATCCT CACCAGCCTT
GAAGTTCGGC CGGACGAGGT GGTGGAGCCG GGGCAGATCC TTGCCAGGCT CGATCCGACC
CGGAACGAGG CCGAGGTCGA GGAAAGCGCC TCGAAATACC GCGCCGCGCT TGCGACCGCC
ACGCGGCTTC AGGCAGAGAT CACCGGGCAG CCGCTGGTCT TTCCCGAGGA ACTGTCCGAT
TTTCCCGATC TGATCGCGGT GGAGACCCAG CTTTACGCCG AACGCAAGCG CAGCCTCGAG
GCGAAGCTCG AGATGCTGGA TCAGGCGATC GACCTGACGG GACAGGAACT GACGATCAAC
GAGCGGCTCA AGGCCACCGG CGCGACCAGC AATATCGACG TGCTGCGGCT GAAGAAGCAG
AAGATCGACC TGGAAATGCA GAAGTCGGAC ACGGCGGCAC AGTTCCATGT CCAGGCCCGC
GAGGATCTGA CCCGCGCCGA GGCCGAGATC GCGGCGCTGC GCCCGATCGT GCGAAGCCGC
TCGGATGTGG TGACGCGGCT GACGCTGCGC TCCCCGGTGC GGGGCATCGT CAAGAATATC
GAGGTCAGCA CCATCGGCGG CGTCGTTTCG CCCAATGGCA AGCTGATGGA CATCATCCCG
CTTGACGACC AGCTGATGAT CGAAGCGAAG ATCACGCCGC GCGACATCGC CTTCATCCGT
CCCGGTCTGT CGGCCACGGT AAAGGTCAGT GCCTATGACT ATGCCGTCTA TGGGGGGCTG
AAGGGCGAGG TGGTGACGAT CTCGCCCGAC ACCATCCAGG ACGAGATCAA CCGGGACCAG
TTCTATTACC GCGTGCTGAT CCGGGCCGAA AGCGACGCGC TGGTCAACGA CGCGGGGCAG
CGTTTTCCCA TCGTGCCCGG CATGATGGCG ACCGTGGACA TCCATACGGG GCAAAAGACA
GTGCTGGAAT ACCTGATCCA GCCGTTCAAT CGCGCCGGCG AGGCCATGAG GGAAAGGTGA
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| Protein sequence | MMGSQAANTE DVGLIFGEED EVRLTRSKRV VLAFFALLAS GLVWAHFAVL DEVSTGTARV
VPTMREQVIQ SLEGGILTSL EVRPDEVVEP GQILARLDPT RNEAEVEESA SKYRAALATA
TRLQAEITGQ PLVFPEELSD FPDLIAVETQ LYAERKRSLE AKLEMLDQAI DLTGQELTIN
ERLKATGATS NIDVLRLKKQ KIDLEMQKSD TAAQFHVQAR EDLTRAEAEI AALRPIVRSR
SDVVTRLTLR SPVRGIVKNI EVSTIGGVVS PNGKLMDIIP LDDQLMIEAK ITPRDIAFIR
PGLSATVKVS AYDYAVYGGL KGEVVTISPD TIQDEINRDQ FYYRVLIRAE SDALVNDAGQ
RFPIVPGMMA TVDIHTGQKT VLEYLIQPFN RAGEAMRER
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