Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_2222 |
Symbol | deoA |
ID | 4579198 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | - |
Start bp | 2221769 |
End bp | 2223061 |
Gene Length | 1293 bp |
Protein Length | 430 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 639769552 |
Product | thymidine phosphorylase |
Protein accession | YP_916010 |
Protein GI | 119384954 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0213] Thymidine phosphorylase |
TIGRFAM ID | [TIGR02643] thymidine phosphorylase [TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCCTG CCGGCCCCGG CCACGACCCG CGTCCGGTGA TCGCCGCCGT TCGCGACGGG CGCGGGCTGG ACGCGGCGGG CGCGGCGCTG GTCGCGCGCG GCCTGGCCGA CGGTTCGGTC AGCGATGCGC AGGCCGCGGC CTTTGCCATG GCGGTGCTGA CGCGCGGTCT GGACGAGGCG GGGCGGGTGG CGTTGACCCG GGCCATGCGC GATTCCGGCC ATGTGCTGCG CTGGGATCTG CCGGGGCCGG TGGTGGACAA GCATTCGACC GGCGGCATCG GCGATGCGGT CAGCCTGATC CTGGCCCCGC TGGTGGCGAG TTGCGGCGCC TATGTGCCGA TGATCTCGGG GCGCGGGCTG GGCCATACCG GCGGCACGCT GGACAAGCTG GAGGCGATCC CCGGCTTCCG CACCGCGCTG TCCGAGGACG ATTTCCGCCG CGTGGTGGCC GAGGTCGGCT GCGCCATCGT CGCGGCCGGG CCGGAACTGG CGCCGGCCGA TGCGCGGCTT TACGCGATCC GCGACGAAAG CGCGACGGTG GGCTCGATCG ACCTTATCAC CGCCTCGATC CTGTCCAAGA AGCTGGCGGC GGGGCTGGAT GCGCTGGTGC TGGACGTCAA GCAAGGCAGC GGCGCCTTTC TGCGCAGCCC GGATGCGGCG CTGGCGCTGG CCCGCGCGCT GGTCGATACC GCGAAGGGTG CCGGCTGCCG CACCCGCGCC TATGTCACCG ACATGGATCA GCCGCTGGCG CGCGCCGCCG GCAATGCGCT GGAACTGCGC GAGGCCATCG CCGTGCTCAC GGGCGAACAG GGGGCGTTGC GCGACCTGTC GCTGGCGCTG TCCTCGGCCT GCCTCGATCT TGGCGGCTTG GCCGACGGCG CCTTGCGGGC GCTGGACGGC GGCGCCGCGG CCGAGCGTTT CGCTCGCATG GTGGTCGCGC AGGGCGGGCC GGCCGACCTG CTCGAACATC CCGAGCGCCA CCTGCCGCCC GCGCCGGTGG TGCGCGCCGT GCCCGGCCAT GGCCGCGTCG TCGCCATCGA TACCGAGGTG CTGGGCCATG CCGTGGTGGC GCTGGGCGGT GGGCGGCTGC ATGCCGGTGA CCGGATCGAC CCTCGGGTGG GGCTTGCGGA ACTGCTCCGC ATCGGCGAGG AGGCGGGTCC GGGTCGTCCC CTGGCGCTGG TCCATGCCGC TTCCGATGCG GCGGCCGATG CGGCGGTCGC CACTGTCGCG GCCGCCTATC TGCTGGGCGA TGGCCCGGAG CCCGGCCCAT TGATCCGCAG CGAGGTAACA TGA
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Protein sequence | MSPAGPGHDP RPVIAAVRDG RGLDAAGAAL VARGLADGSV SDAQAAAFAM AVLTRGLDEA GRVALTRAMR DSGHVLRWDL PGPVVDKHST GGIGDAVSLI LAPLVASCGA YVPMISGRGL GHTGGTLDKL EAIPGFRTAL SEDDFRRVVA EVGCAIVAAG PELAPADARL YAIRDESATV GSIDLITASI LSKKLAAGLD ALVLDVKQGS GAFLRSPDAA LALARALVDT AKGAGCRTRA YVTDMDQPLA RAAGNALELR EAIAVLTGEQ GALRDLSLAL SSACLDLGGL ADGALRALDG GAAAERFARM VVAQGGPADL LEHPERHLPP APVVRAVPGH GRVVAIDTEV LGHAVVALGG GRLHAGDRID PRVGLAELLR IGEEAGPGRP LALVHAASDA AADAAVATVA AAYLLGDGPE PGPLIRSEVT
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