| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2036 |
|---|
| Symbol | |
|---|
| ID | 4580420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 2043489 |
|---|
| End bp | 2045231 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639769365 |
|---|
| Product | type I secretion system ATPase |
|---|
| Protein accession | YP_915824 |
|---|
| Protein GI | 119384768 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0619827 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTTGC CGCCGATGCG ACATGACGGC CAACGCGAAC TGAAATCCGC GCGAGGCATG
GCCTGGCAGC TTTATGCCAT GGTCGGCCTG TTTTCGTTCG CGGTGAACCT GCTGATGCTG
ACCGGGCCGC TCTTCATGAT GCAGGTCTAT GACCGCGTGC TGGCCAGCCG CTCGGTCGAG
ACGCTGACGG CCCTGTTCCT GCTGGTCGTC TTCCTGTTCG CGCTGATGGG GGTGATCGAC
CTGGCGCGCA ACCGCGTCAT GGCCCGCATC GCCGCCCGCT TCCAGGAACG GATGGAGGGG
CGCGTCTTTA CCGCCGCGCT GCAGGACGGC CAGGCCGCCG GCTCGGACCT CGTGGTGCGC
GGCGGCATGC GCGACCTCGA GGCGGTGCAG CGGCTGATCG CCTCGCCGGT GCTGATGGCG
CTGTTCGACC TGCCCTGGGC GCCATTCTTC CTGGCAGCGG TCTTCATCTT CCACCCGATT
CTGGGCGCGG TGGCGACGGC GGGCATGGCG GTCCTGGTCG TGGCGACGCT CATGAACCAA
TGGCTCAGCC GCGACATGCT GCAACAGGCT GCCATCGCCG GCCAGTCGGC CGAGCGCATG
TCCGACCTCT ATCGCGACGA AGGCGAACTG ATCGGCTCGC TCGGCATGCG GGCGGCGGCC
TTCCGGCGCT GGCAGGCGAC GCGCGATGCC GCGACGGCGG CGACGATGCG CGCCAACGAC
CGCTCCACCG GCTTTACCGT ATTCTCCCGC ACCTTCCGGC TGTTTCTGCA AAGCGCGCTG
CTGGCCGCCG GCGCCTGGCT GGTGCTGCGC CAAGAGGTGA CGCCGGGCGC CATGATCGCC
TCTTCGATCC TGATGGGCCG GGCACTGGCC CCGGTCGAGC AGGTGGTGGG CGGCTGGTCC
ATCGTCCAGC GCGCCCAGGA CGGCTGGAAG CGGCTGGTCG AACTGCTCTC GCGCCGCCCG
CCGCTGGCGC AGCGCACGCC CCTGCCCCGG CCCGAGGCTC AGCTTGAAGT CCGCAACCTG
ACCGTCGTGC CCCCCGGCCA GGGGGCGGCG GTGCTGCGCG GCGTCAGCTT CGACCTTGGC
CCCGGGCAGG CGCTGGGGGT GATCGGGCCT TCGGGCGCCG GCAAGACCAC GCTGGCGCGG
GCGCTGATCG CGGCATGGCC CGTGGCCTCG GGCTCGATCC GGCTGGGCGG CGCGACGCTG
GACCAATACG ACCCGGATGC GCTGGGAGGG CTGATCGGCT ATCTGCCGCA GCAGGTGACG
CTGTTCGACG GCACCATCGC CGAAAATATC GCCCGCCTCG CCCCCGAGCC CGATCCGCAG
CGCGTCGTCG CCGCGGCCAT GGCGGCTGCC GCGCATCGCA TGATCCTGGA CCTGCCGCAG
GGCTACGACA CCCGCGTCAG CCAGACCGGC GGACAGCTTT CCGGCGGACA GATCCAGCGT
ATCGGCCTGG CCCGCGCGCT TTACGCCGAT CCGGTGATCT TCGTCCTGGA CGAACCGAAT
TCGAACCTGG ACAACGAGGG ATCGACGGCC CTGAACGTGG CGATCCGCAC CATCAAGGCG
CGCGGCGGCG CGGTCATCAT CATGGCCCAT CGTCCCGCGG CGATCACCGA ATGCGAATTG
CTGCTGGTGC TGGACCAGGG CCTGCGCCGC GCCTTCGGCC CGCGCGACGA GGTGCTGAAA
TCGCTGGTCA GGAACGCCGA CCAGATTACC CGCGCCCAGG GCCATGGCGG AGGCGTGACA
TGA
|
|---|
| Protein sequence | MALPPMRHDG QRELKSARGM AWQLYAMVGL FSFAVNLLML TGPLFMMQVY DRVLASRSVE
TLTALFLLVV FLFALMGVID LARNRVMARI AARFQERMEG RVFTAALQDG QAAGSDLVVR
GGMRDLEAVQ RLIASPVLMA LFDLPWAPFF LAAVFIFHPI LGAVATAGMA VLVVATLMNQ
WLSRDMLQQA AIAGQSAERM SDLYRDEGEL IGSLGMRAAA FRRWQATRDA ATAATMRAND
RSTGFTVFSR TFRLFLQSAL LAAGAWLVLR QEVTPGAMIA SSILMGRALA PVEQVVGGWS
IVQRAQDGWK RLVELLSRRP PLAQRTPLPR PEAQLEVRNL TVVPPGQGAA VLRGVSFDLG
PGQALGVIGP SGAGKTTLAR ALIAAWPVAS GSIRLGGATL DQYDPDALGG LIGYLPQQVT
LFDGTIAENI ARLAPEPDPQ RVVAAAMAAA AHRMILDLPQ GYDTRVSQTG GQLSGGQIQR
IGLARALYAD PVIFVLDEPN SNLDNEGSTA LNVAIRTIKA RGGAVIIMAH RPAAITECEL
LLVLDQGLRR AFGPRDEVLK SLVRNADQIT RAQGHGGGVT
|
|---|
| |