Gene Pden_1928 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_1928 
Symbol 
ID4580587 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp1922493 
End bp1923002 
Gene Length510 bp 
Protein Length169 aa 
Translation table11 
GC content65% 
IMG OID639769249 
Productcell wall hydrolase, SleB 
Protein accessionYP_915718 
Protein GI119384662 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3773] Cell wall hydrolyses involved in spore germination 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.397103 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0105522 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAATCC TGAACGCAAG GCCATGGGGG GGCGGGCTGT CCCTCCTTCT CGTCCTGCTG 
GTCGTGGCAG GCTGCGGGAT CGGCCGCCGG CATTCGGAAC TGGAATGCAT GGAACGTGCC
ATGTTCTTCG AATCGCACCG CTCCAGCCGC GACGGCATGA TCGCGGTGGG CAGCGTGGTG
ATGAACCGCG TCCAGTCGCG CCAATATCCG AACTCGGTCT GCGCCGTGGT GGGACAGAAG
GGCCAGTTTG CGCCCGGCAT CATGTCGCGG CCGATGAAGT CGCAGGCCAT GCCGGAGGTG
CGCGAGGCCG CCCGCTCGGT CATGCGCGGC GAGCGCCATC CGCTCGTCGG CAACGCGATG
TTCTTCCATG CCGCCAGCCA CAGGTTTTCC TATGACAACA TGCATTACGT CCTCGTCGCG
GGCGGCAATG CCTTCTACGA AAAGCGCCGC CGCGAACTGG TGACGCAGCC GGTCCCGCCG
CGCCCCATAG AAGGCATCAC CCGCAGATAG
 
Protein sequence
MRILNARPWG GGLSLLLVLL VVAGCGIGRR HSELECMERA MFFESHRSSR DGMIAVGSVV 
MNRVQSRQYP NSVCAVVGQK GQFAPGIMSR PMKSQAMPEV REAARSVMRG ERHPLVGNAM
FFHAASHRFS YDNMHYVLVA GGNAFYEKRR RELVTQPVPP RPIEGITRR