| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1896 |
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| Symbol | |
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| ID | 4581116 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 1894936 |
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| End bp | 1896588 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639769216 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_915687 |
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| Protein GI | 119384631 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.338897 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCCCGG ATTATGTGAT CGTCGGAGCC GGCTCGGCCG GTTGCGCGCT GGCTTACCGG
CTGGTGATGG CCGGCAAGCG GGTGGACATC ATCGAATATG GCGGCAGCGA TGTCGGGCCC
TTCATCCAGA TGCCGGCGGC GCTGAGCTAT CCGATGAACA TGCGCCGCTA TGACTGGGGG
TTTTCGTCCG AGCCCGAGCC GCATCTGGGC AGGCGCCGGC TGGTCACGCC GCGCGGCAAG
GTGGTCGGCG GCTCGTCCTC GATCAACGGC ATGGTCTTCG TGCGCGGCCA TGCCCGGGAT
TTCGACTTCT GGGCCGAAAG CGGCGCCGGC GGCTGGGCCT ATGCCGACGT GCTGCCCTAT
TTCAAGCGCA TGGAAAGCTC GCATGGCGCG GTCAGCGACT ATCGCGGCAC CGAGGGGCCG
CTGCATGTGA CGCGCGGCTC GCGCAAGAAT CCGCTGTTCA ACGCCTTCAT CCGGGCGGGG
CGTGAGGCCG GCTATCCGAC GACCGAGGAT TACAACGGCG CCCGGCAGGA GGGTTTCGGC
GCCATGGAGG CGACGATCTG GGAAGGCCGG CGCTGGTCGG CCGCCAATGC CTATCTGCGT
CCGGCGCAGG AAACCGGCCA GCTGCGGCTG CGGCGGGGAC TGGCGCAGCG CGTGGTCTTC
GAGGATGGCC GCGCCGTGGG GGTCGAGGTG AAAAACAGCC GCGGGGTCAA TGTATTCCGC
GCGAAACATG AGGTGATCCT TTCGGCCAGC TCGATCAATA CGCCGAAGCT GCTGATGCTG
TCGGGCATCG GGCCGGCCGA GCATCTGGCC GAGCATGGCA TCGCGGTCCG GGCGGACCGG
CCCGGGGTGG GGGCGAACCT GCAGGACCAC CTGGAAGTCT ATATGCAATA TACCGCCACC
AAGCCCATCA CGCTCTACAA GCACTGGAAC CTGTGGGGGA AGGGCTCGAT CGGGGCGCAA
TGGCTGGCGA CGGGGACGGG CCTGGGCGCC TCGAACCAGT TCGAGAGCTG CGGTTTCATC
CGTTCCGCGG CGGGGGTGGA ATATCCCGAC ATCCAGTATC ACTTCCTGCC GCTTGCCGTG
CGCTACGACG GCAAGGCGGC GGCCGAGGGA CATGGCTTCC AGGTCCATGT CGGGCCGATG
CGCTCGAAAT CGCGCGGCAC GGTGCGGCTG AAATCCGCCG ATCCCAGGCA GGCGCCCGAG
ATCCGCTTCA ACTACATGTC GCATCCCGAC GACTGGGCCG AGTTCCGCGC CTGCGTGCGG
CTGACGCGCG AGATCTTCGA GCAGCCGGCC TTTGCCGAAT ACAAGGGCTA CGAGATCCAG
CCCGGCGAGG AAGTCGTGAG CGACGAGCAG ATCGACGCCT TCATCCGCGA ACATGCCGAG
TCGGCATTCC ACCCCTGCGG CACGGCGCGC ATGGGCCGCG CCGACGACCC GATGGCGGTG
GTCGACCCCG AATTGCGGGT GATCGGGGTC GAGGGGCTGC GCGTTGCCGA CAGCTCGATC
TTTCCGCGCA TCACCAATGG CAACCTGAAC GCGCCCTCGA TCATGACCGG CGAAAAGGCC
GCCGACCACA TCCTGGGCCA GGGGATGCTG GCGCCGCTGA ACCTGGGACC GGAGATTTCG
CCCGATTGGG AGAAACTCCA GCGATCCGCC TAG
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| Protein sequence | MIPDYVIVGA GSAGCALAYR LVMAGKRVDI IEYGGSDVGP FIQMPAALSY PMNMRRYDWG
FSSEPEPHLG RRRLVTPRGK VVGGSSSING MVFVRGHARD FDFWAESGAG GWAYADVLPY
FKRMESSHGA VSDYRGTEGP LHVTRGSRKN PLFNAFIRAG REAGYPTTED YNGARQEGFG
AMEATIWEGR RWSAANAYLR PAQETGQLRL RRGLAQRVVF EDGRAVGVEV KNSRGVNVFR
AKHEVILSAS SINTPKLLML SGIGPAEHLA EHGIAVRADR PGVGANLQDH LEVYMQYTAT
KPITLYKHWN LWGKGSIGAQ WLATGTGLGA SNQFESCGFI RSAAGVEYPD IQYHFLPLAV
RYDGKAAAEG HGFQVHVGPM RSKSRGTVRL KSADPRQAPE IRFNYMSHPD DWAEFRACVR
LTREIFEQPA FAEYKGYEIQ PGEEVVSDEQ IDAFIREHAE SAFHPCGTAR MGRADDPMAV
VDPELRVIGV EGLRVADSSI FPRITNGNLN APSIMTGEKA ADHILGQGML APLNLGPEIS
PDWEKLQRSA
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