Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_1853 |
Symbol | |
ID | 4579112 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | - |
Start bp | 1852399 |
End bp | 1855221 |
Gene Length | 2823 bp |
Protein Length | 940 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639769173 |
Product | DNA polymerase I |
Protein accession | YP_915646 |
Protein GI | 119384590 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI) [COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0210712 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGACG GATTCGGCAA GGGCCATCAC CTGCACCTGA TCGACGGATC GGCCTTCATC TTTCGCGCCT ATCACGCGCT GCCGCCGCTG ACCCGGCGCT CGGACGGGCT GCCGATCGGG GCGGTGGCCG GGTTCTGCAA CATGGTGTGG AAATACCTGC AGGACGGCAA GGGATCGGAC CAGCCGACCC ATGCGGCGGT GATCTTCGAC CATTCGGCGC GGACATTCCG CAACGACATC TATCCGCTCT ACAAGGCCAA CCGGCCCGAG CCGCCAGAGG ATCTGCGGCC GCAATTCCCG CTGACCCGCG AGGCGACGCG GGCCTTCAAC ATCGCCTGCA TCGAGACCGA GGGCTTCGAG GCCGACGACA TCATCGCCTC GCTGGCCTGC CAGGCGCGGG ATGCGGGCGG GCGGGTCACC ATCATCAGTT CGGACAAGGA TCTGATGCAG CTGGTCGGGG GCGGCGTCGA GATGATGGAC CCGATCAAGG CCAAGCCCAT CGGTCCTGAC GAGGTGCGCG AGAAATTCGG CGTCGGTCCC GAGCGGGTGG TGGATGTGCA GGCCCTGGCC GGCGATTCCA TCGACAACGT GCCGGGCGCG CCGGGGATCG GCATCAAGAC CGCCGCGCAA CTCATCGAGG AATATGGCGA TCTGGAAAGC CTGCTGGCGC GCGCTGCCGA GATCAAGCAG CCCAAGCGCC GGCAGACGCT GATCGACCAT GCCGAGCAGA TCCGCATCTC GAAGCGGCTG GTCGAGCTGG ACTGCGGGAT GGTGCTGGAT TTCACCCTGG AAAGCCTGGA GATCCGCGAG CCCGATCCCG AGGCGCTGCT GGAATTCCTG ACCCGCATGG AGCTGCGCAC CCTGACCAAG CGAGTGGCCG AGCGTTTCGG GACCGAGCCG CCGACCATGG CCGAGGTGGC TGTTCCCGCA CCCGCCGCCG GTGCGGACCC GGCGATGCCG GCCGCGGCCG AACTGCCGGC GATCGACCGC AGCCTTTACA TCACCATCCG CGACGAGGCC GTGCTGGCCG AGTGGCTGGC CGAGATCGCC GAGAAGGGCG TGGTCGCCAT CGACACCGAG ACCACGGGGC TGGACGAGAT GCAGGCCGAA CTGGTCGGGG TTTCGCTTTG CACCGGCCCG GGGCGGGCGG CCTATCTGCC GCTGGGCCAT GTCGACGGGG CCGCCGATCT GTTCGGCTCG GGCGCGCGGG TCGAGGGGCA GATGGATCTG GACCGTGCGC TGGCGATGCT GAAGCCGGTG CTGGAGGATC CGTCGGTGCT GAAGATCGGC CAGAACATCA AGTATGACTG GAAGGTGCTG GCCCGCCACG GCATCCGCAT GGTGCCTTTG GACGACACCA TGCTGCTGTC CTATGCGCAG AACGCCGGGG CGCACAACCA CGGCATGGAC GAGCTGGCGG ACCTGTATCT GGGCCATCGC TGCCTGCCGA TCAAGGATCT GATCGGCTCG GGCAAGTCGC AGATCAATTT CTCGCAGGTG GCCATCGACA AGGCCAGCGA ATATGCTGCC GAGGATGCCG AGGTGACCTG GCGGCTGTGG CGTCACCTGC GTCCGAAATT GGCGCCGAAC CATGTCACCA CAGCCTATGA ACGGCTGGAG CGGCCGATGA TCGCGGTGCT GGCCGACATG GAGATGGCCG GCATCCGCAT CGATTCCGAG CACCTGAAGC GCATGTCCAA CGCCTTTGCC CAGAAGATGG CGGGGCTGGA GGCCGAGATC CACGAACTGG CCGGCGGGCC GTTCAACGTC GGCAGCCCCA AGCAGCTGGG CGAGATCCTG TTCGAGCGCA TGGGGCTTGC CGGCGGCAAG CAGGGCAAGA CCGGAGCTTT TTCCACCGGC GCCGAGGTGC TGGAGGATCT GGCCGCCGAG GGGCATGAAC TGCCGGCGCG GGTGCTGGAC TGGCGGGCGA TCTCCAAGCT GAAATCGACC TATACCGATG CGCTGCCCTT GCATGTGAAC CCCGAGACCG GCCGCGTGCA CACCAGCTAT TCCATCGCCG GGGCGCAGAC CGGGCGGCTG GCCTCGACCG ATCCGAACCT GCAGAACATT CCCGTGCGGA CCGACGAAGG GCGGCGCATT CGCGAAGCCT TCGTCGCCGC GCCGGGAATG CGGCTGGTGA GCCTGGACTA CAGCCAGATC GAGTTGCGCA TCCTGGCGCA TGTGGCGCAG ATCCCGGCGC TGCAACAGGC CTTTCGCGAC GGAATCGACA TCCATGCCAT GACGGCGAGC CAGATGTTCG GCGTGCCGGT CGAGGGCATG GACCCGATGA TCCGCCGTCG CGCCAAGGCG ATCAATTTCG GGGTGATCTA CGGCATCTCG GGCTTTGGCC TGGCGCGCAA CCTGCGCATT CCGCGCGCCG AGGCGCAGGC CTTCATCGAC ACCTATTTCG AGCGCTTCCC CGAGATCCGC GCCTATATGG ATCGCACCGT GGCCGGGGCC AAGCAGGACG GTTTCGTGCG CACGCTGTTC GGGCGGCGGA TCATGACGCC GGGCATCAAC CAGTCGGGGC CGGCGGCCGG CGGCGCGCGC CGCGCGGCGA TCAACGCGCC GATCCAGGGC GCGGCGGCCG ACATCATCCG CCGGGCCATG ATCCGCATGC CCCAAGCCAT CGCGCATCTG CCGGCCAGGA TGCTGCTGCA GGTGCATGAC GAGCTGGTCT TCGAGGTCGA GGAGGCGGCG GTTCCCGAGC TGGTCGAGGT TGCGCGCGGC GTCATGCAGG GCGCGGCCGA TCCCGCGGTC CGGCTGGACG TGCCGCTGAT CGTCGATGCG GGGCAGGGCG CCAACTGGGC CGAGGCGCAT TGA
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Protein sequence | MTDGFGKGHH LHLIDGSAFI FRAYHALPPL TRRSDGLPIG AVAGFCNMVW KYLQDGKGSD QPTHAAVIFD HSARTFRNDI YPLYKANRPE PPEDLRPQFP LTREATRAFN IACIETEGFE ADDIIASLAC QARDAGGRVT IISSDKDLMQ LVGGGVEMMD PIKAKPIGPD EVREKFGVGP ERVVDVQALA GDSIDNVPGA PGIGIKTAAQ LIEEYGDLES LLARAAEIKQ PKRRQTLIDH AEQIRISKRL VELDCGMVLD FTLESLEIRE PDPEALLEFL TRMELRTLTK RVAERFGTEP PTMAEVAVPA PAAGADPAMP AAAELPAIDR SLYITIRDEA VLAEWLAEIA EKGVVAIDTE TTGLDEMQAE LVGVSLCTGP GRAAYLPLGH VDGAADLFGS GARVEGQMDL DRALAMLKPV LEDPSVLKIG QNIKYDWKVL ARHGIRMVPL DDTMLLSYAQ NAGAHNHGMD ELADLYLGHR CLPIKDLIGS GKSQINFSQV AIDKASEYAA EDAEVTWRLW RHLRPKLAPN HVTTAYERLE RPMIAVLADM EMAGIRIDSE HLKRMSNAFA QKMAGLEAEI HELAGGPFNV GSPKQLGEIL FERMGLAGGK QGKTGAFSTG AEVLEDLAAE GHELPARVLD WRAISKLKST YTDALPLHVN PETGRVHTSY SIAGAQTGRL ASTDPNLQNI PVRTDEGRRI REAFVAAPGM RLVSLDYSQI ELRILAHVAQ IPALQQAFRD GIDIHAMTAS QMFGVPVEGM DPMIRRRAKA INFGVIYGIS GFGLARNLRI PRAEAQAFID TYFERFPEIR AYMDRTVAGA KQDGFVRTLF GRRIMTPGIN QSGPAAGGAR RAAINAPIQG AAADIIRRAM IRMPQAIAHL PARMLLQVHD ELVFEVEEAA VPELVEVARG VMQGAADPAV RLDVPLIVDA GQGANWAEAH
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