| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1811 |
|---|
| Symbol | |
|---|
| ID | 4580511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 1804328 |
|---|
| End bp | 1806226 |
|---|
| Gene Length | 1899 bp |
|---|
| Protein Length | 632 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639769131 |
|---|
| Product | 5'-nucleotidase domain-containing protein |
|---|
| Protein accession | YP_915604 |
|---|
| Protein GI | 119384548 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
|---|
| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0652908 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0688595 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGCGT TATGGACCAA TTGTCTGCAT TCGCATGGCA TGAGCTGCAC GTCCTCTGCC
ATCCATCCGC ATTCCGCCGC CAATGCCGTC GAGCTTCGCA TCATGGCGAC GACGGACCTG
CACATGCATG TGCTGGGCTA TGACTATTTC GCGGACCGGC CCTCGGACCG GCTGGGGCTG
TCGCGGGTGG CGGCGCTGAT CGCCCGCGCG CGCCGGACGG CACGGAATTG CCTGCTGTTC
GACAATGGCG ACGGGCTGCA AGGCAGCCCG ATGGGCGATT ACCTGGCCGA ATCGGACGGC
ATCGGCCCGA ACCGGCCGCA CCCGGCCATC GCGGCGATGA ATGCGCTGCA TTATGACGCG
GCCACCCTTG GAAACCACGA CTTCAGCTTT GGCCTAGGCT TTCTGCGCCG CGCCCTGGAG
GCGGCCGCAT TCCCGGTGGT TTCGACCAAC CTGCGGCCAT TGCGTCCCCT GCCGGTGCAG
AGCCATGTCC TGCTGGAGCG GCAGTTCCAC GACGCGCAAG GACGCCCGCA GCGGCTGCGC
ATCGGCGTGC TGGGTTTTCT GCCGCCCCAG ACGATCGCGT GGGAGCCGAG GCTGAAATCC
GAGATCGCCG TCGAGGACAT CCTGCCGGCC GCCCGCACCG GCATCAGGGC GCTGCGCGAC
CAGGGCGCGC ATCTGGTGGT GGCGCTGGCG CATAGCGGCA TCGGCGCGCT TGCCCCCGCC
CCGATGATGG AAAACGCCGC GACCGCCCTG GCCGCCCTGC CCGGCATCGA CGTGGTGATC
GCCGGCCATA CGCATCGGCT GTTCCCGTCG CCCGACCATC CGCAGGGCCC AGGGATCGAC
GCCCTGCGCG GCACGCTGGC CGGCAAGCCC GCGGTCATGC CGGGCTTCTG GGGCTCGCAT
CTGGGGCTGG TCGACTTGCG GCTGCTGCCC ACGGACGACG GCTGGCGCAT CGCCGGCTTT
GCCTGCCGCG CCGAGCCGGT CGGGACCGAA GACGACGACC CCGCCGTCAC CGGCCCGGCA
CTGGCCGTCC ACCGCCGCAC CCTGCGGCAT TTCCGCCGCC GCATCGGCCG GACCGAGCGG
CCGCTGAACA GCTATTTCTC GCTGATCGGC CAGGATTCCG GGCTGCGGCT GGTGACCATG
GCGCAGCGCT GGCATGTGCG GCACGCCCTG CGCGGCACGC GCTGGCAGGA CCTGCCGATC
CTTTCGGCGG CCGCGCCCTT TCGCGCCGGA GGGCGCGGCG GGCCGCAGCA TTATACCGAT
GTGCCGGCGG GGCGACTGAC GCTGCGCAAC ATCGCCGATC TCTACCTGTT CCCGAACCGG
ATCTGCGCCA TCCGCCTGAC CGGGGCCGAG CTGCGCGAAT GGCTGGAACG CTCAGCCGGC
CTGTTTCTGC GCATCGAGCC GGGCCGGCCC GACCAGCCGC TGATCGACCC GGAGTTTCCC
AGCTACAATT TCGACGTCAT CGACGGGCTC GGCTGGCAGA TCGACCTCAG CCGCCCGCCG
CGCTACGCCC CGGACGGCCG GCTGGCCCAT GGCGATTCGC ACCGCATCGG CGCGCTGACC
CATCGCGGCC GCCCGGTGGC GCCGGACCAG CCCTTTATCC TGGTGACGAA CAGCTACCGG
CTGTCCGATT GCGGCCTGTT CGCCCCGGTG GCGGCGGGCC GGCCGGTGCT GCTGGACGGC
GCCCTGCGCA CCCGCGAGGT GCTGCGCCGC TATGTGGCGC GCCGCCGCGT GCTGGCCCCC
GACCCGCAGA TGGGCTGGAG CTTTCGCCCC TTGCCCGGCG CCTCGGTCCT GTTCGAGACC
GGGCCGGCCG CCGCCCGGCA TCTGGACGGG CTTTCCGCGC GGGCCGAGCC GGCCGGCATG
GGCCCTGACG GCTTCCTGCG CCTGCGGCTG CATCTCTAG
|
|---|
| Protein sequence | MVALWTNCLH SHGMSCTSSA IHPHSAANAV ELRIMATTDL HMHVLGYDYF ADRPSDRLGL
SRVAALIARA RRTARNCLLF DNGDGLQGSP MGDYLAESDG IGPNRPHPAI AAMNALHYDA
ATLGNHDFSF GLGFLRRALE AAAFPVVSTN LRPLRPLPVQ SHVLLERQFH DAQGRPQRLR
IGVLGFLPPQ TIAWEPRLKS EIAVEDILPA ARTGIRALRD QGAHLVVALA HSGIGALAPA
PMMENAATAL AALPGIDVVI AGHTHRLFPS PDHPQGPGID ALRGTLAGKP AVMPGFWGSH
LGLVDLRLLP TDDGWRIAGF ACRAEPVGTE DDDPAVTGPA LAVHRRTLRH FRRRIGRTER
PLNSYFSLIG QDSGLRLVTM AQRWHVRHAL RGTRWQDLPI LSAAAPFRAG GRGGPQHYTD
VPAGRLTLRN IADLYLFPNR ICAIRLTGAE LREWLERSAG LFLRIEPGRP DQPLIDPEFP
SYNFDVIDGL GWQIDLSRPP RYAPDGRLAH GDSHRIGALT HRGRPVAPDQ PFILVTNSYR
LSDCGLFAPV AAGRPVLLDG ALRTREVLRR YVARRRVLAP DPQMGWSFRP LPGASVLFET
GPAAARHLDG LSARAEPAGM GPDGFLRLRL HL
|
|---|
| |