| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1781 |
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| Symbol | |
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| ID | 4580965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 1773407 |
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| End bp | 1775482 |
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| Gene Length | 2076 bp |
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| Protein Length | 691 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639769099 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_915574 |
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| Protein GI | 119384518 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.250213 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.743867 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCGCT TTTTCATCGA CCGTCCGGTC TTCGCCTGGG TGATCTCGAT CCTGATCATG
GGGCTCGGGC TGCTGTCGAT CACCTCGCTG CCGGTGGCGC AATATCCGCA GATCGCGCCG
CCCTCGGTGA CGATCCGCGC CACCTATCCC GGCGCCTCGG CCGATACGGT CGCCAATACG
GTCACCCAGA TCATCGAACA GCAGATGACC GGGCTGGATG GGCTGCGCTA TTTCTCGTCC
AGTTCGACCT CGGCCGGCAC CTCGACCACG ACGCTGACCT TCGAGACCGG CACCGATCCC
GACATCGCCC AGGTGCAGGT GCAGAACAAG CTGGCACAGG CCACCGCATT GCTGCCCGAG
CCGGTGCAGC GCCAGGGCAT CACGGTCGAG AAATCCGCCT CGGGCTTCCT GATGGTCATC
GGCCTGACCT CGGCCGACGA CCGCTATGAG CAGGTGGACC TGGCCGACTA CCTGATCTCG
AACCTCGTGA ACGACCTCAG CCGGGTCGAG GGCGTGGGTT CGGTCCAGGT CTTCGGCGCG
CAATATGCCA TGCGGATCTG GCTCGATCCC TCGAAGCTCG CCGCCTACGA GCTGACGCCC
TCGGACGTGG TGGCGGCGGT CTCGTCGGAA AACGCGCAGA TCTCGGCCGG CTCCTTCGGC
AGCCAGCCCG CGCCCCGGGG GCAGATGCTG AACGCCACCG TCACCGCGCA ATCGCTGCTC
TCGACCCCCG AGGATTTCGA GCAGATCGTG CTGCGCGCCG AGCAGGACGG CGGGCTGATC
CTGCTCAAGG ACGTGGCCCG GGTCGAGATC GGCGCCGAGG ACTACATGAC CAATGCCCGC
TACAACGGCC AGCCGGCCTC GGGCATGGCG ATCAGCCTGG CCTCGGGGGC GAACGCGCTG
GACACGGCGG AACGGGTCAA GGCGCGGATG GAGGAATTCG CCCGCTTCTT CCCCGAGGGC
ATGGACTACG TCATCCCCTT CGACACCACG CCCTTCGTGC TGATCTCCAT CGAGGAGGTG
GTCAAGACGC TGGTCGAGGC CATCGTGCTG GTGTTCTTCG TCATGCTGCT GTTCCTGCAG
AACTGGCGCG CGACGCTGAT CCCGACCCTG GCGGTGCCGG TGGTGCTTCT GGGCACCTTC
GGCGTGCTGG CGGCGCTTGG CTTCACCATC AACACGCTGA CCATGCTGGC CATGGTGCTG
GCCATCGGCC TTCTGGTGGA CGACGCCATC GTCGTGGTCG AGAACGTCGA GCGCATCATG
GAGGAGGAAG GGCTGGACCC GCGCGAGGCG ACGCGCAAGT CCATGGGCCA GATCACCGGC
GCGCTGATCG GCATCGCGCT GGTCCTGTCG GCGGTCTTCG TGCCGATGGC CTTCTTCGGC
GGCTCGACCG GCGTGATCTA CAAGCAGTTC GCCATCACCA TCGCCTCGGC CATGGGCCTG
TCGGTGCTGG TGGCGCTGAC GCTGACGCCG GCGCTTTGCG CCACGCTGCT GAAGAACGAG
CACGGCCACA AGACACGCGG CTTCTTCGGC CTGTTCAACC GCGGCTTCGA CCGCACCATC
CACGGCTATG GCAGTTCGGT GAACTGGCTG ATCCGCCGCC CGCTGCGGAT GATGCTGATC
TACCTGTGCA TCGGCGCGGC CATGGTGTTC CTGTTCCTGC GCACGCCCAC CGGATTCCTG
CCCGACGAGG ACCAGGGCAT CATGTTCGTG CTGGTCCAGG GCCCCACCGG CGCCACGAGC
GAGCGCACGG ATGCGGTGAT CGACCAGATC CAGCACTATT TCGCGGAAAA CGAATCCGAC
AATGTCGAGT CCTTCTTCGG CGTCTCGGGC TTCAGCTTCG CCGGATCGGG GCAGAACATG
GGCATCGCCT TCCTGCGGCT CAAGGACTGG AGCGAGCGGC CCGGCGCCGA GCAGTCGGTG
CAGGCCATCG CCGGGCGGGC ATTCCCGGCG CTGATGGGCA TCCGCGACGC CATGGCCTTC
CCCATCGTTC CGCCCTCGGT GATCGAGCTC GGCAACGTCT CGGGCTTCGA CTTCTACCTG
CAGGCCCGTG CCGGCCCGTG CCGGCCAGGC CCATGA
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| Protein sequence | MARFFIDRPV FAWVISILIM GLGLLSITSL PVAQYPQIAP PSVTIRATYP GASADTVANT
VTQIIEQQMT GLDGLRYFSS SSTSAGTSTT TLTFETGTDP DIAQVQVQNK LAQATALLPE
PVQRQGITVE KSASGFLMVI GLTSADDRYE QVDLADYLIS NLVNDLSRVE GVGSVQVFGA
QYAMRIWLDP SKLAAYELTP SDVVAAVSSE NAQISAGSFG SQPAPRGQML NATVTAQSLL
STPEDFEQIV LRAEQDGGLI LLKDVARVEI GAEDYMTNAR YNGQPASGMA ISLASGANAL
DTAERVKARM EEFARFFPEG MDYVIPFDTT PFVLISIEEV VKTLVEAIVL VFFVMLLFLQ
NWRATLIPTL AVPVVLLGTF GVLAALGFTI NTLTMLAMVL AIGLLVDDAI VVVENVERIM
EEEGLDPREA TRKSMGQITG ALIGIALVLS AVFVPMAFFG GSTGVIYKQF AITIASAMGL
SVLVALTLTP ALCATLLKNE HGHKTRGFFG LFNRGFDRTI HGYGSSVNWL IRRPLRMMLI
YLCIGAAMVF LFLRTPTGFL PDEDQGIMFV LVQGPTGATS ERTDAVIDQI QHYFAENESD
NVESFFGVSG FSFAGSGQNM GIAFLRLKDW SERPGAEQSV QAIAGRAFPA LMGIRDAMAF
PIVPPSVIEL GNVSGFDFYL QARAGPCRPG P
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