| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1647 |
|---|
| Symbol | |
|---|
| ID | 4580829 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 1627853 |
|---|
| End bp | 1628863 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639768961 |
|---|
| Product | TRAP dicarboxylate transporter, DctP subunit |
|---|
| Protein accession | YP_915440 |
|---|
| Protein GI | 119384384 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.301358 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTTC TTACCCGTAT CCTGTCCGGC ACCGCGCTTG CGCTGAGCCT TGGCGCTGCT
GCCCTGCCGG TTTCGGCGGC CGAATATCGC ATCGCGGTCG GCGACGGCGC CGGGGGCACG
CAGGAGGCGC TGGGTAAAGC CTTCGTCGCG GCGCTGGAAG AGAAATCCGG CGGCAAGATG
ACCGGCAAGC TTTTCCTCAA CGGCCAGCTT GGCGACGAGC AGGACACCGT GACCGCCGCC
GCGACCGGCA CGCTGGATTT CTCGATCCTC GCGATCAACA ACATCACGCC TTTCTCGCCC
ACGGTCGGCA CCCTGACCCT GCCTTACGTC ATCCTGAGCC AGGAAGACGC CGAAAAGGTC
ACCCAGGGCG AAATCGGCCG GCAGATGGTC GACCAGACCG TCGAGGATGC GGGCGTTCGC
ATCATCGGCT GGGCCTATTC GGGCTTTCGC GTGCTGACCA ACTCGAAAAA GCCGATCGCC
ACGGTGGCCG ACCTGCAGGG CGTCGTGGTG CGCGTGCCCA AGAACGAGAT CATGATCGAG
ACCTACAAGA GCTGGGGCAT CAACCCGACC CCGATGGCCT GGGGCGAGAC CTTCGCCGCG
CTTCAGCAGA AGGTCGTCGA CGGTCAGGAC AACCCCTACA TGACCGTCAA CGCGATGAAG
TTCTACGAGG TCCAGAAATA CGTCACCAAC CTGCGCTACC TGTTCTCGAT CGAGCCGCTG
ATCGTCAGCG AGGCGCTGTT CCAGAGCCTT TCGCCGGAAG AGCAGCAGCA GGTCCTGGAA
GCCGGGCAGG AGGCGACGCA GGTCTCGGCG CAGTTCCTGC GCGACCAGGA AAACAAGATC
AAGGAAGAGC TGGTCGGCCG GGGCATGGAG ATCACCGAGC CCGCCGATGA GGAAAAGGAG
TTCATCGAAC TGGCGACGAC AAAGGTCTGG CCGAAATTCT ACGACCAGAT CGGCGGCAAG
GAAGTTCTCG ACGGCGTGCT GACCTCGCTG GGCCGCGATC CGGTGGAATA G
|
|---|
| Protein sequence | MSFLTRILSG TALALSLGAA ALPVSAAEYR IAVGDGAGGT QEALGKAFVA ALEEKSGGKM
TGKLFLNGQL GDEQDTVTAA ATGTLDFSIL AINNITPFSP TVGTLTLPYV ILSQEDAEKV
TQGEIGRQMV DQTVEDAGVR IIGWAYSGFR VLTNSKKPIA TVADLQGVVV RVPKNEIMIE
TYKSWGINPT PMAWGETFAA LQQKVVDGQD NPYMTVNAMK FYEVQKYVTN LRYLFSIEPL
IVSEALFQSL SPEEQQQVLE AGQEATQVSA QFLRDQENKI KEELVGRGME ITEPADEEKE
FIELATTKVW PKFYDQIGGK EVLDGVLTSL GRDPVE
|
|---|
| |